BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0239300 Os03g0239300|AK066038
         (240 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G66140.1  | chr1:24620063-24620845 REVERSE LENGTH=261           58   3e-09
AT1G80730.1  | chr1:30339493-30340179 REVERSE LENGTH=229           55   3e-08
AT5G57520.1  | chr5:23296019-23296471 FORWARD LENGTH=151           51   7e-07
AT1G24625.1  | chr1:8726009-8726638 REVERSE LENGTH=210             50   1e-06
AT5G10970.1  | chr5:3469268-3470086 FORWARD LENGTH=273             49   2e-06

>AT1G66140.1 | chr1:24620063-24620845 REVERSE LENGTH=261
          Length = 260

 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 59/138 (42%), Gaps = 26/138 (18%)

Query: 79  VFTCNYCQRKFFSSQALGGHQNXXXXXXXXXXXXXXL---DAFP-----------YGYAD 124
           VF+CNYCQRKF+SSQALGGHQN              +     FP              A 
Sbjct: 84  VFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRAMRMGLAGVFPGRGSSSNYAAAATAAA 143

Query: 125 VASLPLYGAG------LYPIGIQXXXXXXXXXXXXXX--XXXRAELRSARALLGP-MPFF 175
           ++ LPL+G+G         +GI+                   R   R  +   G  +PF+
Sbjct: 144 LSCLPLHGSGNGNMTSFRTLGIRAHSSAHDVSMTRQTPETLIRNIARFNQGYFGNCIPFY 203

Query: 176 VQAAGDEDASFGWPGSFR 193
           V+   D++A   WPGSFR
Sbjct: 204 VE---DDEAEMLWPGSFR 218



>AT1G80730.1 | chr1:30339493-30340179 REVERSE LENGTH=229
          Length = 228

 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 41/80 (51%), Gaps = 17/80 (21%)

Query: 79  VFTCNYCQRKFFSSQALGGHQNXXXXXXXXXXXXXXLD---------AFPYG------YA 123
           VF+CNYCQRKF+SSQALGGHQN                         AF +G      +A
Sbjct: 67  VFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQYYKMTLSSLPSSAFAFGHGSVSRFA 126

Query: 124 DVASLPLYGA--GLYPIGIQ 141
            +ASLPL+G+      +GIQ
Sbjct: 127 SMASLPLHGSVNNRSTLGIQ 146



>AT5G57520.1 | chr5:23296019-23296471 FORWARD LENGTH=151
          Length = 150

 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 20/22 (90%), Positives = 22/22 (100%)

Query: 79  VFTCNYCQRKFFSSQALGGHQN 100
           VF+CNYCQRKF+SSQALGGHQN
Sbjct: 51  VFSCNYCQRKFYSSQALGGHQN 72



>AT1G24625.1 | chr1:8726009-8726638 REVERSE LENGTH=210
          Length = 209

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 19/22 (86%), Positives = 22/22 (100%)

Query: 79  VFTCNYCQRKFFSSQALGGHQN 100
           VF+CNYC+RKF+SSQALGGHQN
Sbjct: 58  VFSCNYCRRKFYSSQALGGHQN 79



>AT5G10970.1 | chr5:3469268-3470086 FORWARD LENGTH=273
          Length = 272

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 8/59 (13%)

Query: 79  VFTCNYCQRKFFSSQALGGHQNXXXXXXXXXXXXXXLDA-----FPYGYADVASLPLYG 132
           +F+CNYCQR F+SSQALGGHQN              + +      PYG+A V   P +G
Sbjct: 103 LFSCNYCQRTFYSSQALGGHQNAHKRERTLAKRGQRMASAAAFGHPYGFAPV---PFHG 158



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.131    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,561,033
Number of extensions: 48651
Number of successful extensions: 187
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 5
Length of query: 240
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 144
Effective length of database: 8,474,633
Effective search space: 1220347152
Effective search space used: 1220347152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 110 (47.0 bits)