BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0239300 Os03g0239300|AK066038
         (240 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0239300  Zinc finger, C2H2-type domain containing protein    236   1e-62

>Os03g0239300 Zinc finger, C2H2-type domain containing protein
          Length = 240

 Score =  236 bits (601), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 132/240 (55%), Positives = 132/240 (55%)

Query: 1   MKSSSQEAGEEVSEISSQAASNNNETCNSSSGKXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MKSSSQEAGEEVSEISSQAASNNNETCNSSSGK                           
Sbjct: 1   MKSSSQEAGEEVSEISSQAASNNNETCNSSSGKVSLDLSLTVAAAAAAAASATESSTTDS 60

Query: 61  GGXXXXXXXXXXXXXXXXVFTCNYCQRKFFSSQALGGHQNXXXXXXXXXXXXXXLDAFPY 120
           GG                VFTCNYCQRKFFSSQALGGHQN              LDAFPY
Sbjct: 61  GGTRPAATATATAREPARVFTCNYCQRKFFSSQALGGHQNAHRRERTLARRAVRLDAFPY 120

Query: 121 GYADVASLPLYGAGLYPIGIQXXXXXXXXXXXXXXXXXRAELRSARALLGPMPFFVQAAG 180
           GYADVASLPLYGAGLYPIGIQ                 RAELRSARALLGPMPFFVQAAG
Sbjct: 121 GYADVASLPLYGAGLYPIGIQAHASVHHHHPGVAAPAGRAELRSARALLGPMPFFVQAAG 180

Query: 181 DEDASFGWPGSFRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAAADEPDLTLRL 240
           DEDASFGWPGSFR                                  QAAADEPDLTLRL
Sbjct: 181 DEDASFGWPGSFRPPPTAATTIPAAAAAPVAVNSGSSNSNHGGSVVVQAAADEPDLTLRL 240



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.131    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,109,054
Number of extensions: 81411
Number of successful extensions: 247
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 244
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 142
Effective length of database: 11,918,829
Effective search space: 1692473718
Effective search space used: 1692473718
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 154 (63.9 bits)