BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0577600 Os12g0577600|AK065535
(565 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0577600 Protein of unknown function DUF1336 domain con... 1169 0.0
AK121415 521 e-148
Os03g0759000 Protein of unknown function DUF1336 domain con... 143 3e-34
Os03g0693000 Protein of unknown function DUF1336 domain con... 100 4e-21
>Os12g0577600 Protein of unknown function DUF1336 domain containing protein
Length = 565
Score = 1169 bits (3023), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 565/565 (100%), Positives = 565/565 (100%)
Query: 1 MGACVSSSKKRRSQKLCCIYRRYRGKVLSNAPIVRASDAGSRAAPGEVVHVEAKSDGSNV 60
MGACVSSSKKRRSQKLCCIYRRYRGKVLSNAPIVRASDAGSRAAPGEVVHVEAKSDGSNV
Sbjct: 1 MGACVSSSKKRRSQKLCCIYRRYRGKVLSNAPIVRASDAGSRAAPGEVVHVEAKSDGSNV 60
Query: 61 TFHLTQLQWHHSELDSENGNVVCQEEAWFDSLSILGSDSDEDFSSVNGDLPAMSNSAGTQ 120
TFHLTQLQWHHSELDSENGNVVCQEEAWFDSLSILGSDSDEDFSSVNGDLPAMSNSAGTQ
Sbjct: 61 TFHLTQLQWHHSELDSENGNVVCQEEAWFDSLSILGSDSDEDFSSVNGDLPAMSNSAGTQ 120
Query: 121 LMHCEDASSIADAIQKFERIFDGSCVAQAIGQYLKRDANKMDRPNQADIQESEKPKIPSP 180
LMHCEDASSIADAIQKFERIFDGSCVAQAIGQYLKRDANKMDRPNQADIQESEKPKIPSP
Sbjct: 121 LMHCEDASSIADAIQKFERIFDGSCVAQAIGQYLKRDANKMDRPNQADIQESEKPKIPSP 180
Query: 181 ESCDVSDVKVDETKTRNEGIKILTKLRRGEDACNTLKSSKEGDKAHESIFKSLTPVCTPR 240
ESCDVSDVKVDETKTRNEGIKILTKLRRGEDACNTLKSSKEGDKAHESIFKSLTPVCTPR
Sbjct: 181 ESCDVSDVKVDETKTRNEGIKILTKLRRGEDACNTLKSSKEGDKAHESIFKSLTPVCTPR 240
Query: 241 HANKVQPLAVASPRGQKKKSGVVRLSFKRKSFDGEQTTEICSSRRYLIHPRAGLLVPQGS 300
HANKVQPLAVASPRGQKKKSGVVRLSFKRKSFDGEQTTEICSSRRYLIHPRAGLLVPQGS
Sbjct: 241 HANKVQPLAVASPRGQKKKSGVVRLSFKRKSFDGEQTTEICSSRRYLIHPRAGLLVPQGS 300
Query: 301 EKISESCWSVLEPSTFKLRGETFFKDKKKLPAPGSSPYTPIGVDMFMSPRKIHHIAQHIE 360
EKISESCWSVLEPSTFKLRGETFFKDKKKLPAPGSSPYTPIGVDMFMSPRKIHHIAQHIE
Sbjct: 301 EKISESCWSVLEPSTFKLRGETFFKDKKKLPAPGSSPYTPIGVDMFMSPRKIHHIAQHIE 360
Query: 361 LPSAGPSEKIPSLLIVNIQMPTYPTAMFLGDSDGEGISLVLYFKLNENYEKEISPLFLDS 420
LPSAGPSEKIPSLLIVNIQMPTYPTAMFLGDSDGEGISLVLYFKLNENYEKEISPLFLDS
Sbjct: 361 LPSAGPSEKIPSLLIVNIQMPTYPTAMFLGDSDGEGISLVLYFKLNENYEKEISPLFLDS 420
Query: 421 IKRLVNDEIEKVKGFPLDSTVPYRERLKILAGLVNPDDMNLSSAERKLVQAYNEKPVLSR 480
IKRLVNDEIEKVKGFPLDSTVPYRERLKILAGLVNPDDMNLSSAERKLVQAYNEKPVLSR
Sbjct: 421 IKRLVNDEIEKVKGFPLDSTVPYRERLKILAGLVNPDDMNLSSAERKLVQAYNEKPVLSR 480
Query: 481 PQHNFYVGPNYFEIDLDVHRFSFISRKGLEAFRERLKHGVIDLGLTIQAQKQEELPENVL 540
PQHNFYVGPNYFEIDLDVHRFSFISRKGLEAFRERLKHGVIDLGLTIQAQKQEELPENVL
Sbjct: 481 PQHNFYVGPNYFEIDLDVHRFSFISRKGLEAFRERLKHGVIDLGLTIQAQKQEELPENVL 540
Query: 541 CCVRLNRVDFVDHGQIPTLLPCDDD 565
CCVRLNRVDFVDHGQIPTLLPCDDD
Sbjct: 541 CCVRLNRVDFVDHGQIPTLLPCDDD 565
>AK121415
Length = 542
Score = 521 bits (1341), Expect = e-148, Method: Compositional matrix adjust.
Identities = 288/585 (49%), Positives = 376/585 (64%), Gaps = 65/585 (11%)
Query: 1 MGACVSSS---KKRRSQKLCCIYRRYRGK---VLSNAPIVRASDAGSRA---APGEVVHV 51
MG+C S S ++ ++ RR R ++ AP R +D+ + EVVH
Sbjct: 1 MGSCASKSVIEQRPPARHYTRKGRRARTNSRSIMPEAPKSRLNDSRGHMTDFSMSEVVHF 60
Query: 52 EAKSDGS----NVTFHLTQLQWHHSELDSENGNVVCQEEAWFDSLSILGSDSDEDFSSVN 107
E S+ + TFHLTQ+QWHHS+ DS N C+E+AWFDS+SIL DSD++F SVN
Sbjct: 61 ETSSNHGKSEHSKTFHLTQMQWHHSQRDS---NGCCKEDAWFDSVSILEDDSDDEFKSVN 117
Query: 108 GDLPAMSNSAGTQLMHCEDASSIADAIQKFERIFDGSCVAQAIGQYLKRD-ANKMDRPNQ 166
GD P N M E+AS ADA+ + + G + ++ QYLKRD +N DR +Q
Sbjct: 118 GDWPDDDNQ-----MKSENASRFADALSRIGDLCRGVPMTLSVEQYLKRDNSNDPDRRSQ 172
Query: 167 ADIQESEKPKIPSPESCDVSDVKVDETKTRNEGIKILTKLRRGEDACNTLKSSKEGDKAH 226
+ + + +PS S K KE + A
Sbjct: 173 SMAMCATRC-LPSSFS---------------------------------FKGLKEANDAD 198
Query: 227 ESIFKSLTP------VCTPRHANKVQPLAVASPRGQKKKSGVVRLSFKRKSFDG-EQTTE 279
E +S TP + + +K+Q L SP KKKS V+RLS+KR S D E +E
Sbjct: 199 EKSKESSTPSRIRKLLHSFSFNDKMQQLTCGSP--AKKKSTVIRLSYKRTSCDDYEDDSE 256
Query: 280 ICSSRRYLIHPRAGLLVPQGSEKISESCWSVLEPSTFKLRGETFFKDKKKLPAPGSSPYT 339
+ S +Y++ P+ G + EK + CWS ++PS FKLR ETF KDKKK AP + Y
Sbjct: 257 LGESEKYVVRPKGGTTILYRGEKPTSGCWSRIDPSLFKLRSETFLKDKKKCAAPNYAAYY 316
Query: 340 PIGVDMFMSPRKIHHIAQHIELPSAGPSEKIPSLLIVNIQMPTYPTAMFLGDSDGEGISL 399
PIGVD+F S +K+ HIAQHIELP P +K+PSLLIVNIQMPTYP AMFLGDS+GEG+SL
Sbjct: 317 PIGVDLFASHKKVQHIAQHIELPQVKPHDKLPSLLIVNIQMPTYPAAMFLGDSNGEGLSL 376
Query: 400 VLYFKLNENYEKEISPLFLDSIKRLVNDEIEKVKGFPLDSTVPYRERLKILAGLVNPDDM 459
VLYFK++E ++KE+S F +SI R + +E EKVKGF +ST+ YR+RLKI+AGLVNP+D+
Sbjct: 377 VLYFKISEYFDKEVSEHFKESIMRFIENESEKVKGFASESTILYRDRLKIMAGLVNPEDL 436
Query: 460 NLSSAERKLVQAYNEKPVLSRPQHNFYVGPNYFEIDLDVHRFSFISRKGLEAFRERLKHG 519
LSS ERKLVQAYNEKPVLSRPQHNF+ G NYFE+DLD+HRFS+I+RKGLE+FRERL +G
Sbjct: 437 QLSSTERKLVQAYNEKPVLSRPQHNFFEGENYFEVDLDIHRFSYIARKGLESFRERLNNG 496
Query: 520 VIDLGLTIQAQKQEELPENVLCCVRLNRVDFVDHGQIPTLLPCDD 564
++DLGLTIQAQKQ+ELPE VLCCVRLN++DF++HGQIPT++ DD
Sbjct: 497 ILDLGLTIQAQKQDELPEQVLCCVRLNKIDFINHGQIPTIVTLDD 541
>Os03g0759000 Protein of unknown function DUF1336 domain containing protein
Length = 84
Score = 143 bits (361), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 65/78 (83%), Positives = 72/78 (92%)
Query: 488 GPNYFEIDLDVHRFSFISRKGLEAFRERLKHGVIDLGLTIQAQKQEELPENVLCCVRLNR 547
GPNYFEIDLDVHRFSFISRKGLEAFRERLKHGV+DLGLTIQAQK EELPE+VLCC+RLN+
Sbjct: 7 GPNYFEIDLDVHRFSFISRKGLEAFRERLKHGVLDLGLTIQAQKAEELPEHVLCCMRLNK 66
Query: 548 VDFVDHGQIPTLLPCDDD 565
+DF D GQIPTL+ D+
Sbjct: 67 IDFADSGQIPTLIMSSDE 84
>Os03g0693000 Protein of unknown function DUF1336 domain containing protein
Length = 83
Score = 99.8 bits (247), Expect = 4e-21, Method: Composition-based stats.
Identities = 42/71 (59%), Positives = 55/71 (77%)
Query: 488 GPNYFEIDLDVHRFSFISRKGLEAFRERLKHGVIDLGLTIQAQKQEELPENVLCCVRLNR 547
G NYFE+D+D+HRFS+ISRKG E F +RLK ++D+GLTIQ K EELPE +LCCVRLN
Sbjct: 10 GDNYFEVDIDMHRFSYISRKGFETFLDRLKICMLDVGLTIQGNKAEELPEQILCCVRLNG 69
Query: 548 VDFVDHGQIPT 558
+D+ + + T
Sbjct: 70 IDYTQYKPLMT 80
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.133 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 19,902,328
Number of extensions: 899954
Number of successful extensions: 2272
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2269
Number of HSP's successfully gapped: 5
Length of query: 565
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 459
Effective length of database: 11,501,117
Effective search space: 5279012703
Effective search space used: 5279012703
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 159 (65.9 bits)