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Os12g0577600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1336 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.91 (0.0347) R2 : 0.926
β1 : -2.23 (0.127) R2dD : 0.053 R2D : 0.0384
β2 : 8.07 (0.113) R2dC : 1.4 R2C : 0.597
β3 : 3.12 (0.0972) R2dE : 0.281 R2E : -0.518
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.138 (0.0739) R2dN8 : 0.000904 R2N8 : -0.011
σ : 0.648
deviance : 193.38
__
_____
C
peak time of C : 8.18
E
wheather : radiation
threshold : 12.49
memory length : 10
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 6.5
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
186.25 0.641 9.92 -2.25 8.07 2.95 -0.432 -1.45 -0.151 8.09 10.33 10 6.68 --
191.14 0.644 9.92 -2.25 8.07 3.02 0.873 -- -0.143 8.13 11.92 10 6.61 --
186.6 0.636 9.92 -2.26 8.07 2.97 -- -1.22 -0.153 8.1 11.37 11 6.68 --
193.38 0.648 9.91 -2.23 8.07 3.12 -- -- -0.138 8.18 12.49 10 6.5 --
289.66 0.793 10.2 -2.36 -- 6.45 -- -1.07 -0.324 -- 127.6 207 0.639 --
227.74 0.707 10 -2.27 6.57 -- 0.382 -- -0.231 6.62 -- -- -- --
228.1 0.707 10 -2.27 6.57 -- -- -- -0.232 6.62 -- -- -- --
228 0.703 10.2 -2.25 -- 6.54 -- -- -0.228 -- 1160 468 3.25 --
325.65 0.84 9.87 -- 8.51 3.63 -- -- 0.0165 8.32 15.4 7 6.78 --
2476.89 2.33 10.1 -2.11 -- -- -- -- -0.0994 -- -- -- -- --
363.68 0.892 9.95 -- 6.54 -- -- -- 0.0203 6.64 -- -- -- --
363.5 0.888 10.1 -- -- 6.53 -- -- 0.0242 -- 1218 474 3.29 --
2594.46 2.38 10.1 -- -- -- -- -- 0.135 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 177.74 humidity 50.0 270 > th dose dependent rect. 20 11
3 179.50 wind 9.0 270 < th dose independent rect. 16 11
4 180.44 temperature 20.0 270 > th dose independent rect. 12 11
8 181.83 radiation 30.0 270 < th dose independent rect. 16 11
10 182.31 temperature 10.0 270 > th dose independent rect. 16 11
12 182.31 temperature 10.0 270 > th dose independent rect. 3 13
13 182.31 atmosphere 1015.0 270 < th dose independent rect. 3 13
16 183.45 wind 9.0 270 < th dose independent rect. 7 13
17 184.59 precipitation 0.1 270 < th dose independent rect. 3 13
18 184.59 precipitation 0.1 270 < th dose dependent rect. 3 13
19 184.68 wind 9.0 270 < th dose independent rect. 3 13
20 184.77 humidity 50.0 720 > th dose dependent rect. 20 3
21 184.99 wind 7.0 30 < th dose independent rect. 18 11
24 185.66 humidity 50.0 720 > th dose dependent rect. 19 5
25 185.84 wind 9.0 270 < th dose independent rect. 20 11
26 185.85 temperature 10.0 270 > th dose independent rect. 20 11
27 185.85 temperature 30.0 270 < th dose independent rect. 20 11
28 185.85 humidity 50.0 270 > th dose independent rect. 20 11
30 185.85 atmosphere 995.0 270 > th dose independent rect. 20 11
31 185.85 radiation 40.0 270 < th dose independent rect. 20 11
32 185.85 temperature 10.0 270 > th dose independent rect. 7 13
33 185.85 atmosphere 1015.0 270 < th dose independent rect. 7 13
38 186.41 wind 1.0 270 > th dose independent rect. 16 11
39 186.41 atmosphere 1015.0 30 < th dose dependent rect. 13 5
41 186.45 precipitation 0.1 270 < th dose independent rect. 16 11
42 186.45 precipitation 0.1 270 < th dose dependent rect. 16 11
47 186.87 wind 1.0 30 > th dose independent rect. 5 13
49 186.95 humidity 50.0 270 > th dose independent rect. 12 6
51 187.11 radiation 10.0 10 < th dose dependent sin 13 NA
58 187.34 precipitation 0.1 30 < th dose independent rect. 5 13
59 187.34 precipitation 0.1 30 < th dose dependent rect. 5 13
63 187.52 temperature 15.0 30 > th dose independent rect. 18 11
64 187.52 atmosphere 1015.0 270 < th dose dependent rect. 13 2
69 187.66 atmosphere 995.0 270 > th dose independent rect. 16 11
72 187.78 radiation 10.0 30 < th dose dependent rect. 18 11
74 187.84 radiation 10.0 30 < th dose independent rect. 18 11
75 187.84 wind 9.0 720 < th dose independent rect. 23 14
78 187.91 humidity 50.0 270 > th dose independent rect. 11 9
79 187.91 atmosphere 995.0 30 > th dose independent rect. 18 11
81 187.92 humidity 50.0 30 > th dose independent rect. 18 11
85 187.92 temperature 10.0 30 > th dose independent rect. 5 13
87 187.92 atmosphere 1015.0 30 < th dose independent rect. 5 13
91 188.13 precipitation 0.1 30 < th dose independent rect. 18 11
92 188.13 precipitation 0.1 30 < th dose dependent rect. 18 11
95 188.29 radiation 40.0 270 < th dose independent rect. 8 3
96 188.37 radiation 40.0 270 < th dose dependent rect. 16 11
97 188.38 temperature 15.0 30 > th dose independent rect. 18 19
99 188.44 precipitation 0.1 30 < th dose independent rect. 13 5
100 188.44 precipitation 0.1 30 < th dose dependent rect. 13 5
103 188.60 wind 9.0 10 < th dose independent rect. 18 19
110 188.74 radiation 1.0 270 > th dose independent rect. 8 3
111 188.75 precipitation 0.1 270 < th dose independent rect. 20 11
112 188.75 precipitation 0.1 270 < th dose dependent rect. 20 11
118 188.92 temperature 15.0 270 > th dose independent rect. 8 3
120 188.95 temperature 10.0 720 > th dose independent rect. 13 10
121 188.95 temperature 10.0 720 > th dose independent rect. 23 14
122 188.95 atmosphere 995.0 720 > th dose independent rect. 23 14
125 188.97 wind 9.0 720 < th dose independent rect. 7 6
126 188.97 atmosphere 995.0 30 > th dose independent rect. 18 19
127 188.98 temperature 10.0 30 > th dose independent rect. 13 5
129 188.98 atmosphere 1010.0 30 < th dose independent rect. 13 5
134 189.01 precipitation 0.1 30 < th dose independent rect. 18 19
135 189.01 precipitation 0.1 30 < th dose dependent rect. 18 19
138 189.08 wind 7.0 720 < th dose independent rect. 23 5
145 189.22 wind 1.0 30 > th dose independent rect. 13 5
147 189.29 wind 9.0 720 < th dose independent rect. 16 19
149 189.34 wind 9.0 270 < th dose independent rect. 15 22
153 189.40 humidity 90.0 30 < th dose independent rect. 13 5
156 189.43 precipitation 0.1 270 < th dose independent rect. 23 13
158 189.43 precipitation 0.1 270 < th dose dependent rect. 23 13
160 189.48 precipitation 0.1 270 < th dose independent rect. 7 13
162 189.48 precipitation 0.1 270 < th dose dependent rect. 7 13
165 189.54 radiation 40.0 270 < th dose dependent rect. 20 11
173 189.68 temperature 10.0 720 > th dose independent rect. 7 6
174 189.68 atmosphere 995.0 720 > th dose independent rect. 7 6
175 189.68 atmosphere 1015.0 720 < th dose independent rect. 7 6
176 189.68 temperature 10.0 720 > th dose independent rect. 13 18
177 189.69 precipitation 0.1 720 < th dose independent rect. 7 6
186 189.69 precipitation 0.1 720 < th dose dependent rect. 7 6
196 189.75 wind 9.0 30 < th dose independent rect. 5 13
198 189.77 precipitation 0.1 270 < th dose independent rect. 18 18
199 189.77 precipitation 0.1 270 < th dose dependent rect. 18 18
201 189.79 precipitation 0.1 720 < th dose independent rect. 23 5
202 189.79 precipitation 0.1 720 < th dose dependent rect. 23 5
203 189.80 wind 9.0 720 < th dose independent rect. 1 10
219 189.93 wind 9.0 270 < th dose independent rect. 18 18
222 189.96 atmosphere 995.0 270 > th dose independent rect. 3 13
226 190.02 humidity 50.0 30 > th dose independent rect. 18 19
228 190.08 temperature 10.0 720 > th dose independent rect. 1 10
229 190.08 atmosphere 995.0 720 > th dose independent rect. 1 10
230 190.08 temperature 10.0 720 > th dose independent rect. 11 14
234 190.13 precipitation 0.1 270 < th dose independent rect. 8 3
235 190.13 precipitation 0.1 270 < th dose dependent rect. 8 3
238 190.17 wind 9.0 30 < th dose independent rect. 13 5
243 190.27 temperature 20.0 720 > th dose independent rect. 20 3
245 190.28 atmosphere 995.0 270 > th dose independent rect. 8 3
246 190.28 atmosphere 1015.0 270 < th dose independent rect. 8 3
247 190.28 temperature 10.0 270 > th dose independent rect. 11 21
248 190.29 wind 9.0 270 < th dose independent rect. 8 3
251 190.30 humidity 60.0 720 > th dose independent rect. 19 6
253 190.33 temperature 10.0 720 > th dose independent rect. 23 5
254 190.33 temperature 30.0 720 < th dose independent rect. 23 5
255 190.33 humidity 50.0 720 > th dose independent rect. 23 5
258 190.33 atmosphere 995.0 720 > th dose independent rect. 23 5
259 190.33 radiation 1.0 720 < th dose independent rect. 23 5
264 190.33 temperature 10.0 720 > th dose independent rect. 4 19
265 190.33 radiation 1.0 720 < th dose dependent rect. 23 5
270 190.35 humidity 90.0 90 < th dose independent rect. 9 4
271 190.37 precipitation 0.1 270 < th dose independent rect. 12 11
274 190.37 precipitation 0.1 270 < th dose dependent rect. 12 11
275 190.43 humidity 50.0 270 > th dose independent rect. 18 18
276 190.43 wind 9.0 720 < th dose independent rect. 24 19
283 190.50 atmosphere 1010.0 270 < th dose independent rect. 12 6
284 190.51 temperature 10.0 270 > th dose independent rect. 12 6
294 190.55 humidity 50.0 270 > th dose independent rect. 8 3
295 190.57 precipitation 0.1 90 < th dose independent rect. 13 20
296 190.57 precipitation 0.1 90 < th dose dependent rect. 13 20
298 190.60 wind 1.0 270 > th dose independent rect. 12 6
301 190.65 atmosphere 995.0 270 > th dose independent rect. 18 18
313 190.72 temperature 10.0 720 > th dose independent rect. 19 6
314 190.72 temperature 30.0 720 < th dose independent rect. 19 6
316 190.72 atmosphere 995.0 720 > th dose independent rect. 19 6
317 190.72 radiation 1.0 720 < th dose independent rect. 19 6
323 190.72 temperature 10.0 720 > th dose independent rect. 1 18
324 190.72 temperature 10.0 90 > th dose independent rect. 13 20
325 190.72 radiation 1.0 720 < th dose dependent rect. 19 6
333 190.76 wind 1.0 10 > th dose independent rect. 18 11
334 190.82 wind 1.0 90 > th dose independent rect. 18 10
338 190.86 wind 9.0 720 < th dose independent rect. 23 21
350 190.96 temperature 10.0 720 > th dose independent rect. 16 19
359 191.06 precipitation 0.1 270 < th dose independent rect. 11 21
360 191.06 precipitation 0.1 270 < th dose dependent rect. 11 21
379 191.13 radiation 40.0 270 < th dose independent rect. 7 5
390 191.32 temperature 30.0 270 < th dose independent rect. 11 9
394 191.34 atmosphere 1015.0 90 < th dose dependent rect. 13 8
398 191.36 wind 1.0 90 > th dose independent rect. 9 4
403 191.43 wind 5.0 720 < th dose independent rect. 1 1
405 191.43 radiation 40.0 10 < th dose independent rect. 13 5
413 191.44 radiation 1.0 10 > th dose independent rect. 13 21
425 191.53 wind 9.0 720 < th dose independent rect. 19 6
430 191.56 temperature 10.0 720 > th dose independent rect. 20 3
431 191.56 temperature 30.0 720 < th dose independent rect. 20 3
432 191.56 humidity 50.0 720 > th dose independent rect. 20 3
436 191.56 atmosphere 995.0 720 > th dose independent rect. 20 3
437 191.56 radiation 1.0 720 < th dose independent rect. 20 3
444 191.56 temperature 10.0 720 > th dose independent rect. 23 21
445 191.56 radiation 10.0 720 < th dose dependent rect. 20 3
457 191.63 atmosphere 995.0 270 > th dose independent rect. 12 6
462 191.68 humidity 50.0 720 > th dose independent rect. 1 10
464 191.71 temperature 15.0 270 > th dose independent rect. 20 15
467 191.77 atmosphere 995.0 270 > th dose independent rect. 7 13
484 191.86 temperature 10.0 1440 > th dose independent rect. 14 5
488 191.86 temperature 10.0 1440 > th dose independent rect. 19 19
491 191.86 atmosphere 995.0 1440 > th dose independent rect. 19 19
495 191.89 wind 5.0 720 < th dose independent rect. 24 3
504 191.94 atmosphere 1015.0 270 < th dose independent rect. 11 10
509 191.99 wind 9.0 720 < th dose independent rect. 20 3
511 192.00 precipitation 0.1 90 < th dose independent rect. 1 12
513 192.00 precipitation 0.1 90 < th dose dependent rect. 1 12
516 192.03 temperature 30.0 270 < th dose independent rect. 12 6
518 192.10 precipitation 0.1 270 < th dose independent rect. 20 15
519 192.10 precipitation 0.1 270 < th dose dependent rect. 20 15
525 192.14 precipitation 0.1 720 < th dose independent rect. 1 10
527 192.14 precipitation 0.1 720 < th dose dependent rect. 1 10
541 192.20 temperature 30.0 270 < th dose independent rect. 8 3
542 192.20 atmosphere 1000.0 270 > th dose independent rect. 20 15
543 192.20 radiation 1.0 90 > th dose independent rect. 13 20
550 192.25 humidity 50.0 720 > th dose independent rect. 23 14
567 192.40 wind 1.0 270 > th dose independent rect. 13 2
584 192.47 wind 1.0 90 > th dose dependent rect. 13 8
587 192.49 wind 9.0 90 < th dose independent rect. 13 20
590 192.53 temperature 10.0 90 > th dose independent rect. 1 12
592 192.53 atmosphere 995.0 90 > th dose independent rect. 1 12
593 192.53 atmosphere 1015.0 90 < th dose independent rect. 1 12
594 192.55 precipitation 0.1 270 < th dose independent rect. 11 9
595 192.55 precipitation 0.1 270 < th dose dependent rect. 11 9
597 192.57 temperature 10.0 270 > th dose independent rect. 13 2
599 192.57 atmosphere 1010.0 270 < th dose independent rect. 13 2
602 192.57 humidity 50.0 270 > th dose independent rect. 20 15
605 192.57 temperature 10.0 270 > th dose independent rect. 15 22
609 192.60 wind 9.0 270 < th dose independent rect. 20 15
612 192.63 precipitation 0.1 270 < th dose independent rect. 13 2
613 192.63 wind 1.0 270 > th dose independent rect. 11 9
614 192.63 precipitation 0.1 270 < th dose dependent rect. 13 2
616 192.64 precipitation 0.1 270 < th dose independent rect. 15 22
617 192.64 precipitation 0.1 270 < th dose dependent rect. 15 22
620 192.67 temperature 30.0 30 < th dose independent rect. 18 11
624 192.72 temperature 10.0 1440 > th dose independent rect. 19 11
627 192.72 temperature 30.0 1440 < th dose independent rect. 19 11
631 192.72 humidity 50.0 1440 > th dose independent rect. 19 11
633 192.72 atmosphere 995.0 1440 > th dose independent rect. 19 11
634 192.72 radiation 20.0 1440 < th dose independent rect. 19 11
643 192.72 temperature 10.0 1440 > th dose independent rect. 6 13
648 192.74 temperature 10.0 270 > th dose independent rect. 11 9
652 192.74 wind 9.0 270 < th dose independent rect. 11 21
669 192.88 temperature 30.0 270 < th dose independent rect. 18 18
673 192.93 temperature 30.0 270 < th dose independent rect. 20 15
685 192.99 wind 9.0 270 < th dose independent rect. 13 2
686 192.99 atmosphere 1015.0 270 < th dose independent rect. 23 13
702 193.10 radiation 40.0 270 < th dose independent rect. 8 12
704 193.13 atmosphere 995.0 30 > th dose independent rect. 13 5
709 193.18 humidity 50.0 10 > th dose independent rect. 13 5
731 193.30 temperature 20.0 10 > th dose independent rect. 13 20
744 193.35 atmosphere 995.0 270 > th dose independent rect. 11 9
751 193.38 temperature 20.0 10 > th dose independent rect. 9 4
752 193.38 temperature 10.0 30 > th dose dependent rect. 13 5
766 193.44 humidity 90.0 10 < th dose independent rect. 10 3
777 193.49 atmosphere 995.0 90 > th dose independent rect. 9 12
781 193.50 humidity 80.0 90 < th dose independent rect. 18 19
795 193.60 radiation 10.0 10 < th dose independent sin 12 NA
797 193.60 wind 1.0 270 > th dose independent rect. 7 13
803 193.64 atmosphere 1015.0 90 < th dose independent rect. 13 20
885 193.91 temperature 10.0 90 > th dose dependent rect. 9 4
905 193.98 atmosphere 1015.0 30 < th dose dependent rect. 5 13
925 194.03 humidity 50.0 720 > th dose dependent rect. 4 3
927 194.04 temperature 20.0 10 > th dose independent rect. 13 12
929 194.05 wind 1.0 10 > th dose independent rect. 9 4
938 194.07 radiation 20.0 30 < th dose dependent rect. 5 13
981 194.24 atmosphere 995.0 30 > th dose independent rect. 5 13
993 194.27 atmosphere 995.0 270 > th dose independent rect. 15 22