BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0573800 Os12g0573800|AK106961
(200 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0573800 Similar to Piccolo protein (Aczonin) 407 e-114
Os12g0573700 Hypothetical protein 298 3e-81
Os04g0454600 Conserved hypothetical protein 69 2e-12
Os12g0127500 Conserved hypothetical protein 69 3e-12
>Os12g0573800 Similar to Piccolo protein (Aczonin)
Length = 200
Score = 407 bits (1045), Expect = e-114, Method: Compositional matrix adjust.
Identities = 200/200 (100%), Positives = 200/200 (100%)
Query: 1 MACLPLTSPARGICITSRALFEFQLCIRTEDSPEAEDEPKGGTLIEGCTEFTNILRSTSF 60
MACLPLTSPARGICITSRALFEFQLCIRTEDSPEAEDEPKGGTLIEGCTEFTNILRSTSF
Sbjct: 1 MACLPLTSPARGICITSRALFEFQLCIRTEDSPEAEDEPKGGTLIEGCTEFTNILRSTSF 60
Query: 61 TETVRLYGEKCGLGVKFLLLVNAVQATVDVEIIHSRACGLNLKLYAKTSGFSDVLRLFRG 120
TETVRLYGEKCGLGVKFLLLVNAVQATVDVEIIHSRACGLNLKLYAKTSGFSDVLRLFRG
Sbjct: 61 TETVRLYGEKCGLGVKFLLLVNAVQATVDVEIIHSRACGLNLKLYAKTSGFSDVLRLFRG 120
Query: 121 VAQSSRKISSVVAVVRRSHLDLCIEGSPADIDLGEKLPCTRWEHRFGAGFHGTVEEVVKL 180
VAQSSRKISSVVAVVRRSHLDLCIEGSPADIDLGEKLPCTRWEHRFGAGFHGTVEEVVKL
Sbjct: 121 VAQSSRKISSVVAVVRRSHLDLCIEGSPADIDLGEKLPCTRWEHRFGAGFHGTVEEVVKL 180
Query: 181 GDFTTISVKVTWKAVSKLPP 200
GDFTTISVKVTWKAVSKLPP
Sbjct: 181 GDFTTISVKVTWKAVSKLPP 200
>Os12g0573700 Hypothetical protein
Length = 320
Score = 298 bits (762), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 147/166 (88%), Positives = 153/166 (92%)
Query: 31 DSPEAEDEPKGGTLIEGCTEFTNILRSTSFTETVRLYGEKCGLGVKFLLLVNAVQATVDV 90
DSPEAEDEP G TLIE CTEFTNILRS SFT+TVRLYGEKCGL VKF LLVNAVQATVDV
Sbjct: 127 DSPEAEDEPIGETLIERCTEFTNILRSASFTKTVRLYGEKCGLDVKFALLVNAVQATVDV 186
Query: 91 EIIHSRACGLNLKLYAKTSGFSDVLRLFRGVAQSSRKISSVVAVVRRSHLDLCIEGSPAD 150
EIIHS ACGLNLKLYAKTSGFSDV+RLFRGVAQS R+I S+VAVVRRSHLDLCIEGSPAD
Sbjct: 187 EIIHSPACGLNLKLYAKTSGFSDVIRLFRGVAQSGRRIRSLVAVVRRSHLDLCIEGSPAD 246
Query: 151 IDLGEKLPCTRWEHRFGAGFHGTVEEVVKLGDFTTISVKVTWKAVS 196
I LGEKLPC RWEH+FGAGFH T +EVVKLGDFTTISVKVTWKAVS
Sbjct: 247 IGLGEKLPCVRWEHKFGAGFHRTADEVVKLGDFTTISVKVTWKAVS 292
>Os04g0454600 Conserved hypothetical protein
Length = 481
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 94/195 (48%), Gaps = 19/195 (9%)
Query: 4 LPLTSPARGICITSRALFEFQLCIRTEDSPEAEDEPKGGTLIEGCTEFTNILRSTSFTET 63
+ +T P RGI + L E+ + I+T E E LI+G T+ +IL S
Sbjct: 301 IEMTGPKRGIDFSCAVLVEYDMRIKT-----GEREEDDLQLIDGATDLDHILTSHVPVRN 355
Query: 64 VRLYGEKCGLGVKFLLLVNAVQATVDVEIIHSRACGLNLKLYAKTSGFSDVLRLFRGVAQ 123
R+YG+ + + L+ A +ATV+V +I +L L TSG + +RLF G
Sbjct: 356 -RIYGDCGAVDITQANLLYAFEATVEV-VISEVQTSFDLCLSCFTSGLHEEIRLFDGAIS 413
Query: 124 SSRKISS-VVAVVRRSHLDLCIEGSPADIDLGEKLPCTRWEH--RFGAGFHGTVEEVVKL 180
SR + V+AV+ +DL + + LG EH F A HG E +K+
Sbjct: 414 ESRDLRRYVIAVMEHECMDLKFK-----VGLGSGCFA---EHCRSFKATNHGCASEQIKI 465
Query: 181 GDFTTISVKVTWKAV 195
+F +ISVKVTW A+
Sbjct: 466 -EFASISVKVTWSAM 479
>Os12g0127500 Conserved hypothetical protein
Length = 364
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 98/209 (46%), Gaps = 22/209 (10%)
Query: 2 ACLPLTSPARGICITSRALFEFQLCIRTEDSPEAEDEPKGGTLIEGCTEFTNILRSTSFT 61
+ +P++ P RGI R L EF + I+ ++ + + + G +I C+EF +L FT
Sbjct: 162 SLIPMSGPKRGIGNQVRVLIEFDMKIKNGETQDDDFQLIDGAII--CSEF--VLPDRVFT 217
Query: 62 ETVRLYGEKCGLGVKFLLLVNAVQATVDVEIIHSRACGLNLKLYAKTSGFSDVLRLFRGV 121
+ R+ G+ + + L AV+AT+ V I GL+L LY+ TS + +RLF GV
Sbjct: 218 Q--RIEGDCGAVDISRALFHEAVEATIQVSISQVHVNGLSLSLYSYTSRIPEKIRLFDGV 275
Query: 122 AQSSRKISSVVAVVRRSHLDLCI-----EGSPADI----------DLGEKLPCTRWEHRF 166
++ VVAVV + L L +GS DI D G+ F
Sbjct: 276 ISKPCDLNRVVAVVENTPLFLIFRAVHRDGSDYDIPKYCPLVFKVDQGDGSYRVSEYCPF 335
Query: 167 GAGFHGTVEEVVKLGDFTTISVKVTWKAV 195
A HG + +KLG + +KV+W +
Sbjct: 336 KARRHGYDMKELKLGG-ARVLLKVSWSTL 363
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.137 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,807,904
Number of extensions: 270666
Number of successful extensions: 544
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 547
Number of HSP's successfully gapped: 4
Length of query: 200
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 104
Effective length of database: 12,023,257
Effective search space: 1250418728
Effective search space used: 1250418728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)