Os04g0454600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0454600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.91 | 0.304 | 8.66 | 1.13 | 0.736 | -0.703 | 0.348 | -0.258 | 0.124 | 18.1 | 1.75 | 1371 | -- | -- |
| 41.85 | 0.301 | 8.65 | 1.14 | 0.736 | -0.674 | 0.353 | -- | 0.13 | 18.2 | 2.091 | 1363 | -- | -- |
| 42.11 | 0.302 | 8.65 | 1.14 | 0.744 | -0.678 | -- | -0.0515 | 0.132 | 18.2 | 2.08 | 1362 | -- | -- |
| 42.11 | 0.302 | 8.65 | 1.15 | 0.743 | -0.683 | -- | -- | 0.137 | 18.2 | 2.097 | 1362 | -- | -- |
| 68.39 | 0.385 | 8.65 | 1.12 | -- | -0.672 | -- | -0.02 | 0.134 | -- | 2.143 | 1422 | -- | -- |
| 49.3 | 0.329 | 8.67 | 1.05 | 0.721 | -- | 0.464 | -- | 0.0294 | 17.3 | -- | -- | -- | -- |
| 49.82 | 0.331 | 8.67 | 1.05 | 0.725 | -- | -- | -- | 0.0314 | 17.4 | -- | -- | -- | -- |
| 68.38 | 0.385 | 8.65 | 1.11 | -- | -0.655 | -- | -- | 0.127 | -- | 2.15 | 1422 | -- | -- |
| 71.38 | 0.393 | 8.67 | -- | 0.711 | -0.683 | -- | -- | 0.00908 | 18.1 | 9.64 | 2789 | -- | -- |
| 77.2 | 0.411 | 8.66 | 1.03 | -- | -- | -- | -- | 0.0136 | -- | -- | -- | -- | -- |
| 78.95 | 0.416 | 8.7 | -- | 0.708 | -- | -- | -- | -0.0857 | 17.5 | -- | -- | -- | -- |
| 90.17 | 0.442 | 8.65 | -- | -- | -0.72 | -- | -- | 0.0985 | -- | 8.491 | 8637 | -- | -- |
| 105.02 | 0.478 | 8.69 | -- | -- | -- | -- | -- | -0.1 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.14 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 4 |
| 5 | 38.31 | humidity | 90.0 | 90 | < th | dose independent | rect. | 7 | 5 |
| 14 | 38.82 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 7 | 5 |
| 16 | 38.89 | temperature | 20.0 | 30 | > th | dose independent | rect. | 8 | 4 |
| 20 | 39.19 | wind | 7.0 | 30 | < th | dose independent | rect. | 8 | 4 |
| 24 | 39.26 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 8 | 4 |
| 35 | 39.42 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 8 | 1 |
| 39 | 39.56 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 3 |
| 54 | 39.63 | wind | 1.0 | 10 | > th | dose independent | rect. | 8 | 4 |
| 56 | 39.64 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 8 | 1 |
| 59 | 39.67 | radiation | 10.0 | 90 | > th | dose independent | rect. | 7 | 5 |
| 105 | 39.84 | radiation | 1.0 | 270 | > th | dose independent | rect. | 8 | 1 |
| 140 | 39.96 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 8 | 4 |
| 141 | 39.96 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 8 | 4 |
| 142 | 39.96 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 8 | 4 |
| 143 | 39.96 | temperature | 10.0 | 30 | > th | dose independent | rect. | 12 | 20 |
| 144 | 39.96 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 8 | 4 |
| 167 | 39.99 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 170 | 39.99 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 172 | 39.99 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 13 | 20 |
| 177 | 40.02 | temperature | 20.0 | 270 | > th | dose independent | rect. | 8 | 1 |
| 184 | 40.07 | wind | 9.0 | 30 | < th | dose independent | rect. | 12 | 20 |
| 188 | 40.10 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 14 |
| 198 | 40.17 | humidity | 50.0 | 30 | > th | dose independent | rect. | 8 | 4 |
| 202 | 40.19 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 14 |
| 210 | 40.23 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 12 | 20 |
| 211 | 40.23 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 12 | 20 |
| 214 | 40.24 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 21 | 10 |
| 218 | 40.29 | wind | 7.0 | 270 | < th | dose independent | rect. | 8 | 1 |
| 225 | 40.34 | humidity | 60.0 | 270 | > th | dose independent | rect. | 8 | 1 |
| 239 | 40.38 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 14 |
| 250 | 40.38 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 14 |
| 257 | 40.42 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 10 |
| 258 | 40.42 | temperature | 30.0 | 270 | < th | dose independent | rect. | 21 | 10 |
| 259 | 40.42 | humidity | 50.0 | 270 | > th | dose independent | rect. | 21 | 10 |
| 261 | 40.42 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 10 |
| 262 | 40.42 | radiation | 30.0 | 270 | < th | dose independent | rect. | 21 | 10 |
| 264 | 40.42 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 14 |
| 275 | 40.47 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 8 | 1 |
| 280 | 40.47 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 8 | 1 |
| 313 | 40.48 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 20 | 16 |
| 315 | 40.49 | temperature | 10.0 | 270 | > th | dose independent | rect. | 8 | 1 |
| 318 | 40.49 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 8 | 1 |
| 319 | 40.49 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 8 | 1 |
| 322 | 40.49 | humidity | 80.0 | 10 | < th | dose independent | rect. | 23 | 13 |
| 323 | 40.49 | temperature | 10.0 | 270 | > th | dose independent | rect. | 9 | 23 |
| 332 | 40.51 | wind | 9.0 | 270 | < th | dose independent | rect. | 21 | 10 |
| 334 | 40.51 | temperature | 10.0 | 270 | > th | dose independent | rect. | 10 | 21 |
| 361 | 40.57 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 12 | 20 |
| 368 | 40.59 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 18 | 18 |
| 376 | 40.62 | radiation | 40.0 | 10 | < th | dose independent | rect. | 12 | 20 |
| 424 | 40.82 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 21 | 10 |
| 432 | 40.85 | wind | 9.0 | 270 | < th | dose dependent | rect. | 8 | 1 |
| 448 | 40.91 | wind | 9.0 | 90 | < th | dose dependent | rect. | 8 | 4 |
| 458 | 40.96 | humidity | 50.0 | 10 | > th | dose independent | rect. | 12 | 20 |
| 490 | 41.05 | wind | 9.0 | 270 | < th | dose independent | rect. | 10 | 21 |
| 493 | 41.06 | wind | 1.0 | 270 | > th | dose independent | rect. | 8 | 1 |
| 501 | 41.08 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 3 | 9 |
| 551 | 41.17 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 10 |
| 554 | 41.17 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 10 |
| 565 | 41.25 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 10 | 21 |
| 566 | 41.25 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 10 | 21 |
| 567 | 41.26 | temperature | 30.0 | 270 | < th | dose independent | rect. | 8 | 1 |
| 592 | 41.32 | wind | 1.0 | 30 | > th | dose independent | rect. | 12 | 20 |
| 620 | 41.36 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 10 | 21 |
| 656 | 41.40 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 7 | 5 |
| 659 | 41.41 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 698 | 41.47 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 12 | 20 |
| 717 | 41.53 | radiation | 40.0 | 270 | < th | dose independent | rect. | 8 | 1 |
| 718 | 41.53 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 14 |
| 726 | 41.55 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 14 |
| 732 | 41.56 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 23 | 9 |
| 764 | 41.59 | temperature | 30.0 | 30 | < th | dose independent | rect. | 12 | 20 |
| 765 | 41.59 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 12 | 20 |
| 811 | 41.63 | radiation | 1.0 | 720 | < th | dose independent | rect. | 5 | 19 |
| 818 | 41.64 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 20 | 16 |
| 887 | 41.78 | radiation | 20.0 | 90 | < th | dose independent | rect. | 23 | 9 |
| 888 | 41.78 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 5 | 19 |
| 898 | 41.80 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 19 | 4 |
| 899 | 41.80 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 24 | 12 |
| 903 | 41.81 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 22 | 14 |
| 946 | 41.89 | radiation | 1.0 | 270 | < th | dose independent | rect. | 21 | 21 |
| 947 | 41.89 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 15 |
| 958 | 41.91 | radiation | 10.0 | 10 | > th | dose dependent | sin | 7 | NA |
| 966 | 41.92 | radiation | 10.0 | 270 | < th | dose dependent | sin | 9 | NA |
| 967 | 41.93 | radiation | 10.0 | 90 | > th | dose independent | sin | 5 | NA |
| 975 | 41.93 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 21 | 19 |
| 982 | 41.94 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 24 | 12 |