FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0573800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Piccolo protein (Aczonin).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.49 (0.0379) R2 : 0.313
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.2 (0.0986) R2dC : 0.218 R2C : 0.199
β3 : 2.63 (0.324) R2dE : 0.102 R2E : 0.0711
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.242 (0.0798) R2dN8 : 0.017 R2N8 : 0.00994
σ : 0.71
deviance : 232.46
__
_____
C
peak time of C : 7.04
E
wheather : atmosphere
threshold : 996.3
memory length : 645
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
222.89 0.701 5.06 -3.74 1.18 31 -0.402 -172 0.202 6.98 994.5 1706 -- --
1068.4 1.52 5.11 -3.6 0.133 4.37 5.88 -- -1.97 12.7 993.4 1984 -- --
223.3 0.696 5.06 -3.75 1.18 31 -- -172 0.203 7.03 994.5 1714 -- --
229.88 0.706 4.54 -0.321 1.13 2.74 -- -- 0.119 7.14 996.3 623 -- --
296.19 0.802 5 -3.02 -- 25.2 -- -138 0.205 -- 994.7 1189 -- --
263.43 0.761 4.5 -0.283 1.15 -- -0.569 -- 0.161 6.81 -- -- -- --
264.25 0.761 4.5 -0.292 1.14 -- -- -- 0.162 6.86 -- -- -- --
300.66 0.808 4.52 -0.371 -- 2.34 -- -- 0.226 -- 996.8 705 -- --
232.46 0.71 4.49 -- 1.2 2.63 -- -- 0.242 7.04 996.3 645 -- --
332.78 0.852 4.53 -0.267 -- -- -- -- 0.184 -- -- -- -- --
266.49 0.764 4.49 -- 1.14 -- -- -- 0.195 6.88 -- -- -- --
304.13 0.812 4.51 -- -- 2.27 -- -- 0.263 -- 996.8 705 -- --
334.66 0.854 4.52 -- -- -- -- -- 0.214 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 211.38 humidity 80 14400 < th dose dependent rect. 1 1
4 212.68 temperature 30 43200 > th dose independent rect. 8 1
18 212.83 temperature 30 43200 > th dose dependent rect. 8 1
32 212.84 temperature 30 43200 < th dose independent rect. 4 5
38 213.12 temperature 30 43200 < th dose independent rect. 8 1
40 213.30 temperature 30 43200 < th dose independent rect. 23 10
41 213.30 temperature 30 43200 < th dose independent rect. 19 14
43 213.59 temperature 30 43200 < th dose independent rect. 21 12
47 215.44 humidity 80 14400 > th dose independent rect. 21 9
56 216.01 humidity 80 14400 < th dose independent rect. 20 10
58 216.14 radiation 40 43200 > th dose independent rect. 14 1
98 217.91 atmosphere 1000 10 < th dose dependent rect. 17 13
113 218.39 humidity 80 14400 < th dose dependent rect. 20 10
119 218.59 atmosphere 1000 30 < th dose dependent rect. 17 17
122 218.63 atmosphere 1000 90 < th dose dependent rect. 16 11
135 219.03 atmosphere 1000 10 < th dose dependent rect. 17 9
139 219.11 atmosphere 1000 10 < th dose dependent rect. 17 11
171 219.77 humidity 80 14400 > th dose independent rect. 24 1
179 220.19 atmosphere 995 14400 < th dose independent rect. 17 1
180 220.19 atmosphere 995 14400 < th dose dependent rect. 17 1
189 220.52 atmosphere 1000 720 < th dose dependent rect. 17 1
190 220.54 atmosphere 995 14400 > th dose independent rect. 16 2
211 220.72 radiation 10 43200 > th dose independent rect. 16 2
276 221.52 humidity 80 14400 < th dose dependent rect. 21 2
278 221.58 humidity 80 14400 < th dose independent rect. 5 1
311 222.13 humidity 80 14400 < th dose independent rect. 24 6
316 222.25 atmosphere 995 1440 > th dose independent rect. 16 21
319 222.32 humidity 80 14400 < th dose independent rect. 1 2
330 222.44 atmosphere 995 14400 > th dose independent rect. 16 5
355 222.65 humidity 80 14400 > th dose independent rect. 4 1
371 222.85 atmosphere 995 1440 > th dose independent rect. 16 5
375 222.89 atmosphere 995 1440 < th dose independent rect. 17 1
383 222.91 atmosphere 1000 30 < th dose dependent sin 13 NA
395 223.08 atmosphere 1000 270 < th dose dependent rect. 14 13
399 223.16 radiation 10 43200 > th dose independent sin 14 NA
431 223.48 atmosphere 995 1440 > th dose independent rect. 4 16
454 223.63 atmosphere 995 1440 > th dose independent rect. 17 1
493 223.87 atmosphere 995 1440 > th dose independent rect. 12 9
495 223.91 humidity 60 43200 > th dose independent rect. 11 2
589 224.21 wind 1 43200 > th dose independent rect. 4 1
595 224.24 atmosphere 995 1440 > th dose independent rect. 8 13
626 224.33 wind 9 14400 > th dose dependent rect. 13 1
695 224.55 atmosphere 995 14400 > th dose independent rect. 12 6
696 224.55 atmosphere 995 1440 < th dose dependent sin 14 NA
716 224.65 atmosphere 995 1440 < th dose dependent no NA NA
909 224.67 atmosphere 995 14400 > th dose independent rect. 8 10
951 224.76 wind 1 43200 < th dose independent rect. 4 1
968 224.81 atmosphere 995 14400 > th dose independent rect. 12 9