BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0568800 Os12g0568800|AB011271
(872 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0568800 Similar to Importin-beta2 (Fragment) 1713 0.0
Os05g0353400 Armadillo-like helical domain containing protein 1021 0.0
AK110202 409 e-114
Os03g0294600 Similar to Importin-beta1 337 2e-92
>Os12g0568800 Similar to Importin-beta2 (Fragment)
Length = 872
Score = 1713 bits (4436), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 834/872 (95%), Positives = 834/872 (95%)
Query: 1 MSLDITQVLLSAQSPDGATRKLAEESLKQFQEQNLPGFLFSLSNELANEEKPEESRRLAG 60
MSLDITQVLLSAQSPDGATRKLAEESLKQFQEQNLPGFLFSLSNELANEEKPEESRRLAG
Sbjct: 1 MSLDITQVLLSAQSPDGATRKLAEESLKQFQEQNLPGFLFSLSNELANEEKPEESRRLAG 60
Query: 61 LILKNALDAKEQHRKNELFQRWLALDVGVKAQIKGFLLQTLXXXXXXXXXXXXQVIAKVA 120
LILKNALDAKEQHRKNELFQRWLALDVGVKAQIKGFLLQTL QVIAKVA
Sbjct: 61 LILKNALDAKEQHRKNELFQRWLALDVGVKAQIKGFLLQTLSSPVASARSTSSQVIAKVA 120
Query: 121 GIEIPQKQWPELIASLLSNIHQVQPNVKQATLETLGYLCEEVSPEAVDQDQVNKILTAVV 180
GIEIPQKQWPELIASLLSNIHQVQPNVKQATLETLGYLCEEVSPEAVDQDQVNKILTAVV
Sbjct: 121 GIEIPQKQWPELIASLLSNIHQVQPNVKQATLETLGYLCEEVSPEAVDQDQVNKILTAVV 180
Query: 181 QGMNASEGNSDVRLAATRALYNALGFAQVNFSNDMERDYIMRVVCEATQSTDVKIRQAAF 240
QGMNASEGNSDVRLAATRALYNALGFAQVNFSNDMERDYIMRVVCEATQSTDVKIRQAAF
Sbjct: 181 QGMNASEGNSDVRLAATRALYNALGFAQVNFSNDMERDYIMRVVCEATQSTDVKIRQAAF 240
Query: 241 ECLVAISSTYYDKLATYMQDIFNITAKAVRGDEESVALQAIEFWSSICDEEIDILDEYSS 300
ECLVAISSTYYDKLATYMQDIFNITAKAVRGDEESVALQAIEFWSSICDEEIDILDEYSS
Sbjct: 241 ECLVAISSTYYDKLATYMQDIFNITAKAVRGDEESVALQAIEFWSSICDEEIDILDEYSS 300
Query: 301 EFTADSDVPCYYFIKQALPALVPMLLETLLKQEEDQDLDEGAWNLAMAGGTCLGLVARTV 360
EFTADSDVPCYYFIKQALPALVPMLLETLLKQEEDQDLDEGAWNLAMAGGTCLGLVARTV
Sbjct: 301 EFTADSDVPCYYFIKQALPALVPMLLETLLKQEEDQDLDEGAWNLAMAGGTCLGLVARTV 360
Query: 361 GDDIVPLVMPFVEENITKPDWRHREAATYAFGSILEGPSADKLAPLVNVALNFMLSALVN 420
GDDIVPLVMPFVEENITKPDWRHREAATYAFGSILEGPSADKLAPLVNVALNFMLSALVN
Sbjct: 361 GDDIVPLVMPFVEENITKPDWRHREAATYAFGSILEGPSADKLAPLVNVALNFMLSALVN 420
Query: 421 DPSNHVKDTTAWTLGRIFEFLHGSALETAPIITSENCQQILTVLLQSMKDVPNVAEKACG 480
DPSNHVKDTTAWTLGRIFEFLHGSALETAPIITSENCQQILTVLLQSMKDVPNVAEKACG
Sbjct: 421 DPSNHVKDTTAWTLGRIFEFLHGSALETAPIITSENCQQILTVLLQSMKDVPNVAEKACG 480
Query: 481 ALYFLAQGYVDAGSASPLTPFFQDIIQSLLFVTHREDAGESRLRTAAYETLNEVVRCSIE 540
ALYFLAQGYVDAGSASPLTPFFQDIIQSLLFVTHREDAGESRLRTAAYETLNEVVRCSIE
Sbjct: 481 ALYFLAQGYVDAGSASPLTPFFQDIIQSLLFVTHREDAGESRLRTAAYETLNEVVRCSIE 540
Query: 541 ETGPIVMQLVPVIMMELHQTLEAGKLSTDEREKRSELQGLLCGCLQVIIQKLGAMESTKY 600
ETGPIVMQLVPVIMMELHQTLEAGKLSTDEREKRSELQGLLCGCLQVIIQKLGAMESTKY
Sbjct: 541 ETGPIVMQLVPVIMMELHQTLEAGKLSTDEREKRSELQGLLCGCLQVIIQKLGAMESTKY 600
Query: 601 SFLQYADQMMELFLRVFACRNATVHEEXXXXXXXXXXXXXPNFSKYMPQFYQYLEMGLQN 660
SFLQYADQMMELFLRVFACRNATVHEE PNFSKYMPQFYQYLEMGLQN
Sbjct: 601 SFLQYADQMMELFLRVFACRNATVHEEAMLAIGALAYAAGPNFSKYMPQFYQYLEMGLQN 660
Query: 661 FEEYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDI 720
FEEYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDI
Sbjct: 661 FEEYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDI 720
Query: 721 ALAIGENFEKYLIYAMPMLQSXXXXXXXXXXXXXEMLDYTNQLRNGILEAYSGILQGFKS 780
ALAIGENFEKYLIYAMPMLQS EMLDYTNQLRNGILEAYSGILQGFKS
Sbjct: 721 ALAIGENFEKYLIYAMPMLQSAADLSAHAAAADDEMLDYTNQLRNGILEAYSGILQGFKS 780
Query: 781 SPKTQLLMQYAPNILNFLDALYNGKDMDDTVMKTAIGVLGDLADTLGVHAGPLINQSISS 840
SPKTQLLMQYAPNILNFLDALYNGKDMDDTVMKTAIGVLGDLADTLGVHAGPLINQSISS
Sbjct: 781 SPKTQLLMQYAPNILNFLDALYNGKDMDDTVMKTAIGVLGDLADTLGVHAGPLINQSISS 840
Query: 841 KKFLEECLASDDPLVKESADWARVAISRAVSG 872
KKFLEECLASDDPLVKESADWARVAISRAVSG
Sbjct: 841 KKFLEECLASDDPLVKESADWARVAISRAVSG 872
>Os05g0353400 Armadillo-like helical domain containing protein
Length = 868
Score = 1021 bits (2639), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 526/872 (60%), Positives = 653/872 (74%), Gaps = 10/872 (1%)
Query: 3 LDITQVLLSAQSPDGATRKLAEESLKQFQEQNLPGFLFSLSNELANEEKPEESRRLAGLI 62
++ITQ+LLSAQS DG R +AE +LKQFQEQNLP FL SLS EL++ EKP ESRRLAG+I
Sbjct: 1 MNITQILLSAQSADGNLRVVAEGNLKQFQEQNLPNFLLSLSVELSDNEKPPESRRLAGII 60
Query: 63 LKNALDAKEQHRKNELFQRWLALDVGVKAQIKGFLLQTLXXXXXXXXXXXXQVIAKVAGI 122
LKN+LDAK+ +K L Q+W++LD +K +IK LL TL QVIAKVA I
Sbjct: 61 LKNSLDAKDSAKKELLIQQWVSLDPSIKQKIKESLLITLGSSVHDARHTSSQVIAKVASI 120
Query: 123 EIPQKQWPELIASLLSNIHQ--VQPNVKQATLETLGYLCEEVSPEAVDQDQVNKILTAVV 180
EIP+++W ELIA LL N+ Q +KQATLE LGY+CEE+SPE ++QDQVN +LTAVV
Sbjct: 121 EIPRREWQELIAKLLGNMTQQGAPAPLKQATLEALGYVCEEISPEHLEQDQVNAVLTAVV 180
Query: 181 QGMNASEGNSDVRLAATRALYNALGFAQVNFSNDMERDYIMRVVCEATQSTDVKIRQAAF 240
QGMN +E + +VRLAA +ALYNAL FA+ NF+N+MER+YIM+V+C+ S +V+IRQAAF
Sbjct: 181 QGMNQTELSPEVRLAAVKALYNALDFAESNFANEMERNYIMKVICDTAVSKEVEIRQAAF 240
Query: 241 ECLVAISSTYYDKLATYMQDIFNITAKAVRGDEESVALQAIEFWSSICDEEIDILDEYSS 300
ECLVAI+STYY L YMQ IFN+TA AV+GDEE+VALQAIEFWS+ICDEEI++ +EY
Sbjct: 241 ECLVAIASTYYVHLDPYMQTIFNLTANAVKGDEEAVALQAIEFWSTICDEEIELQEEYEG 300
Query: 301 EFTADSDVPCYYFIKQALPALVPMLLETLLKQEEDQDLDEGAWNLAMAGGTCLGLVARTV 360
A+S V Y FI++ALP+LVPMLLETLLKQEEDQD D+ WN++M+GGTCLGL+ARTV
Sbjct: 301 SDDANSTVN-YRFIEKALPSLVPMLLETLLKQEEDQDQDDNVWNISMSGGTCLGLIARTV 359
Query: 361 GDDIVPLVMPFVEENITKPDWRHREAATYAFGSILEGPSADKLAPLVNVALNFMLSALVN 420
GD IVPLVMPFVE NITKPDW REAAT+AFGSILEGPS +KLAPLV +F+L+
Sbjct: 360 GDAIVPLVMPFVEGNITKPDWHCREAATFAFGSILEGPSVEKLAPLVQAGFDFLLNT-TK 418
Query: 421 DPSNHVKDTTAWTLGRIFEFLHGSALETAPIITSENCQQILTVLLQSMKDVPNVAEKACG 480
DP++ V+DTTAWTLGR+FE LH A PIITS N +I+TVLL+S KDVPNVAEK CG
Sbjct: 419 DPNSQVRDTTAWTLGRVFELLHSPA-SANPIITSANLTRIMTVLLESSKDVPNVAEKVCG 477
Query: 481 ALYFLAQGYVDAGS-ASPLTPFFQDIIQSLLFVTHREDAGESRLRTAAYETLNEVVRCS- 538
A+YFLAQGY DA S +S LTPF ++I +LL R D RLR +AYE LNE+VR S
Sbjct: 478 AIYFLAQGYEDAESISSVLTPFLPNLIAALLSAADRADTTHFRLRASAYEALNEIVRVSN 537
Query: 539 IEETGPIVMQLVPVIMMELHQTLEAGKLSTDEREKRSELQGLLCGCLQVIIQKLGAMEST 598
I ET I+ QL+ IM L+ T + LS+ ++EK+S+LQ LLCG LQVIIQKL + ++
Sbjct: 538 ISETSGIIGQLLQEIMRRLNLTFDLHILSSGDKEKQSDLQALLCGVLQVIIQKLSSSDA- 596
Query: 599 KYSFLQYADQMMELFLRVFACRNATVHEEXXXXXXXXXXXXXPNFSKYMPQFYQYLEMGL 658
K Q ADQ+M LFL VFAC ++TVHEE +F KYMP+F++YLE GL
Sbjct: 597 KSIIAQTADQLMFLFLHVFACHSSTVHEEAMLAIGALAYATGTDFVKYMPEFFKYLEAGL 656
Query: 659 QNFEEYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFG 718
QN+EEYQVC+I+VGVVGD+CRALEDKILP+CDGIMT LLKDLS++ L+RSVKPPIFSCFG
Sbjct: 657 QNYEEYQVCSISVGVVGDICRALEDKILPFCDGIMTVLLKDLSNSMLNRSVKPPIFSCFG 716
Query: 719 DIALAIGENFEKYLIYAMPMLQSXXXXXXXXXXXXXEMLDYTNQLRNGILEAYSGILQGF 778
DIALAIG+NFEKYL YAMPMLQ +M+DY NQLR GI EAYSGILQG
Sbjct: 717 DIALAIGDNFEKYLPYAMPMLQGAAELLAVLDHTDEDMVDYGNQLRRGIFEAYSGILQGI 776
Query: 779 KSSPKTQLLMQYAPNILNFLDALYNGKDMDDTVMKTAIGVLGDLADTLGVHAGPLINQSI 838
K + K QL++ YA ++L F +A+Y + D++V K A+ VLGDLADTLG + L ++
Sbjct: 777 KGA-KAQLMIPYASHLLQFTEAVYKDRSRDESVTKAAVAVLGDLADTLGSSSKDLFKSNL 835
Query: 839 SSKKFLEECLASDDPLVKESADWARVAISRAV 870
+FL EC DD V+++A WA+ I++A+
Sbjct: 836 FHVEFLRECHDLDDE-VRDTASWAQGMINQAL 866
>AK110202
Length = 815
Score = 409 bits (1051), Expect = e-114, Method: Compositional matrix adjust.
Identities = 255/724 (35%), Positives = 404/724 (55%), Gaps = 30/724 (4%)
Query: 114 QVIAKVAGIEIPQKQWPELIASLLSNIHQVQPNVKQATLETLGYLCEEVSPEAVDQ--DQ 171
Q IA +A IE+P++QW EL+A L+ N+ + + K+++L+T+GY+CE E D
Sbjct: 57 QFIAAIAAIELPREQWGELMAKLVENVGNGKDSTKRSSLQTIGYICETDDSELRDALAKH 116
Query: 172 VNKILTAVVQGMNASEGNSDVRLAATRALYNALGFAQVNFSNDMERDYIMRVVCEATQST 231
N ILTAVVQG E N+++R+AA AL ++L F + NF N+ ER+YIM+VVCEATQ+
Sbjct: 117 SNAILTAVVQGARKEEPNNEIRVAAITALGDSLEFVRTNFENEGERNYIMQVVCEATQAE 176
Query: 232 DVKIRQAAFECLVAISSTYYDKLATYMQD-IFNITAKAVRGDEESVALQAIEFWSSICDE 290
+ +I++ A+ CL I YY+K+ YM+ +F +T + ++ DEE VA A+EFW ++C+E
Sbjct: 177 ESRIQEGAYVCLNRIMGLYYEKMRFYMEKALFGLTIQGMKNDEEDVAKLAVEFWCTVCEE 236
Query: 291 EIDILDEYS-SEFTADSDV-PCYYFIKQALPALVPMLLETLLKQEEDQDLDEGAWNLAMA 348
EI I D+ S +E +++ P + F + A ++P+LLE + KQ+ED DE +N++ A
Sbjct: 237 EISIEDDNSAAEQEGSTELRPYFNFARVATLEVLPVLLELMAKQDEDATDDE--YNVSRA 294
Query: 349 GGTCLGLVARTVGDDIVPLVMPFVEENITKPDWRHREAATYAFGSILEGPSADKLAPLVN 408
C+ L ++ VG +VP ++ FVE+++ DW +R+AA AFG+++EGP L PLV
Sbjct: 295 AYQCVQLWSQAVGSQVVPPILAFVEKHLRAEDWHYRDAAVSAFGAMMEGPDEKVLDPLVR 354
Query: 409 VALNFMLSALVNDPSNHVKDTTAWTLGRIFEFLHGSALETAPIITSENCQQILTVLLQSM 468
AL ++ ++ND VKD+ A+ LGR+ E + S I EN +++T L +
Sbjct: 355 QALPVLIE-MMNDSVVQVKDSVAFALGRVCEAAYES-------IDDENLTKLITSLFSGL 406
Query: 469 KDVPNVAEKACGALYFLAQGYVD--AGSASPLTPFFQDIIQSLLFVTHREDAGESRLRTA 526
P +A C AL LA + +PL+ +Q Q LL VT E +++LRTA
Sbjct: 407 GSHPKMASSCCWALMNLADRFAGEPGCETNPLSQHWQASAQHLLQVT--ESTQDNQLRTA 464
Query: 527 AYETLNEVVRCSIEETGPIVMQLVPVIMMELHQTLEAGK--LSTDEREKRSELQGLLCGC 584
AYE LN + + ++ +V L VI+ L +T+ + +S ++R E+Q L
Sbjct: 465 AYEVLNAFITNAANDSVHMVAGLSDVIIERLEKTIPMQQQVVSVEDRLTLQEIQTSLTSV 524
Query: 585 LQVIIQKLGAMESTKYSFLQYADQMMELFLRVFACR--NATVHEEXXXXXXXXXXXXXPN 642
+ IIQ+L + AD++M+L L + ++V + +
Sbjct: 525 IITIIQRL------EREIAPQADRIMQLLLSLLQSLPGKSSVPDTVFGAISALANVLDAD 578
Query: 643 FSKYMPQFYQYLEMGLQNFEEYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSS 702
F KYM F +L L N EE +C++ +G+V D+ R LE+K+ PYCD M L +L S
Sbjct: 579 FDKYMSAFVPFLLSALNNQEEPALCSVAIGLVSDISRGLEEKVQPYCDQFMNSLPNNLRS 638
Query: 703 NQLHRSVKPPIFSCFGDIALAIGENFEKYLIYAMPMLQSXXXXXXXXXXXXXEMLDYTNQ 762
L KP I CFGDIA AIG FE YL +LQ EMLDY
Sbjct: 639 AVLGNQFKPAILQCFGDIAQAIGGAFETYLSVVGQVLQQ-AAGISAQEETSFEMLDYIVS 697
Query: 763 LRNGILEAYSGILQGFKSSPKTQLLMQYAPNILNFLDALYNGKDMDDTVMKTAIGVLGDL 822
LR GI++A+ G++ ++ K QLL + +I L +Y + + ++++++GV+GD+
Sbjct: 698 LREGIMDAWDGVIISMRAGGKVQLLQPFVESIFQLLSQVYQDSNRTEGLLRSSMGVVGDI 757
Query: 823 ADTL 826
++
Sbjct: 758 SEAF 761
>Os03g0294600 Similar to Importin-beta1
Length = 371
Score = 337 bits (865), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 182/369 (49%), Positives = 245/369 (66%), Gaps = 4/369 (1%)
Query: 504 DIIQSLLFVTHREDAGESRLRTAAYETLNEVVRCS-IEETGPIVMQLVPVIMMELHQTLE 562
+II +LL R D+ SRL +AYETLNE+VRCS I E +++QL+ I+ L+QT E
Sbjct: 3 EIISALLATADRSDSNNSRLCASAYETLNEIVRCSHISENLNMIVQLLQEILKRLNQTFE 62
Query: 563 AGKLSTDEREKRSELQGLLCGCLQVIIQKLGAMESTKYSFLQYADQMMELFLRVFACRNA 622
S+D++EK+S+LQ LLCG QVI+QK + K + L +ADQMM LFLRVF+C ++
Sbjct: 63 IQITSSDDKEKQSDLQALLCGVAQVILQKFSSCHE-KSAILHFADQMMVLFLRVFSCNSS 121
Query: 623 TVHEEXXXXXXXXXXXXXPNFSKYMPQFYQYLEMGLQNFEEYQVCAITVGVVGDLCRALE 682
VHEE P F KYMP+F++YLEMGLQNF YQVC ++VGVVGD+C AL+
Sbjct: 122 NVHEEAMLAIGALAYATGPEFVKYMPEFHKYLEMGLQNFGAYQVCCVSVGVVGDICHALD 181
Query: 683 DKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYLIYAMPMLQSX 742
DK+LPYCDGIM+ LLKDLSS +LHRSVKPPI SC GDIAL +GE+FEKY+ Y MPMLQ
Sbjct: 182 DKVLPYCDGIMSTLLKDLSSPELHRSVKPPILSCIGDIALTMGEHFEKYVPYTMPMLQGA 241
Query: 743 XXXXXXXXXXXXEMLDYTNQLRNGILEAYSGILQGFKSSPKTQLLMQYAPNILNFLD-AL 801
+ ++Y N+L I EAYSGILQGFK+S K++L++ YA NI F++ L
Sbjct: 242 AELCFRMDAPDDDSIEYQNELSRSIFEAYSGILQGFKNS-KSELMVPYAGNIFQFVELVL 300
Query: 802 YNGKDMDDTVMKTAIGVLGDLADTLGVHAGPLINQSISSKKFLEECLASDDPLVKESADW 861
+ +++V K + ++GDLAD LG + L S + L +C SDD ++E+A W
Sbjct: 301 KDNLLRNESVTKAGVAMVGDLADALGPNIKLLFKDSKFHSELLGQCCQSDDEQLRETASW 360
Query: 862 ARVAISRAV 870
+ I+R +
Sbjct: 361 VQGVITRVL 369
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 25,249,743
Number of extensions: 951274
Number of successful extensions: 2438
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 2408
Number of HSP's successfully gapped: 6
Length of query: 872
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 762
Effective length of database: 11,292,261
Effective search space: 8604702882
Effective search space used: 8604702882
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 160 (66.2 bits)