Os05g0353400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Armadillo-like helical domain containing protein.
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Os05g0353400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Armadillo-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 85.09 | 0.433 | 10.8 | 1.84 | 1.88 | 0.941 | 1.25 | 0.712 | 0.222 | 17.3 | 2.133 | 93 | -- | -- |
| 86.04 | 0.432 | 10.8 | 1.85 | 1.91 | 0.847 | 1.37 | -- | 0.234 | 17.2 | 3.097 | 92 | -- | -- |
| 88.83 | 0.439 | 10.8 | 1.83 | 1.89 | 0.914 | -- | 0.944 | 0.228 | 17.3 | 2.24 | 94 | -- | -- |
| 90.88 | 0.444 | 10.7 | 1.85 | 1.9 | 0.884 | -- | -- | 0.234 | 17.3 | 1.41 | 92 | -- | -- |
| 159.43 | 0.588 | 10.8 | 1.72 | -- | 2.29 | -- | 0.937 | 0.0532 | -- | -18.09 | 468 | -- | -- |
| 95.9 | 0.459 | 10.7 | 1.84 | 2.13 | -- | 1.32 | -- | 0.267 | 16.5 | -- | -- | -- | -- |
| 100.62 | 0.47 | 10.7 | 1.85 | 2.14 | -- | -- | -- | 0.274 | 16.5 | -- | -- | -- | -- |
| 160.89 | 0.591 | 10.8 | 1.69 | -- | 2.32 | -- | -- | 0.0389 | -- | -18.09 | 485 | -- | -- |
| 180.86 | 0.626 | 10.8 | -- | 1.82 | 0.772 | -- | -- | 0.0471 | 17.2 | 0.8998 | 166 | -- | -- |
| 345.07 | 0.868 | 10.7 | 1.77 | -- | -- | -- | -- | 0.218 | -- | -- | -- | -- | -- |
| 191.13 | 0.647 | 10.8 | -- | 2.1 | -- | -- | -- | 0.068 | 16.5 | -- | -- | -- | -- |
| 236.12 | 0.716 | 10.8 | -- | -- | 2.36 | -- | -- | -0.153 | -- | -16.85 | 497 | -- | -- |
| 427.67 | 0.965 | 10.8 | -- | -- | -- | -- | -- | 0.0216 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 75.50 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 19 |
| 2 | 75.50 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 19 |
| 3 | 75.57 | wind | 5.0 | 90 | < th | dose independent | rect. | 3 | 5 |
| 4 | 75.63 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 6 | 75.78 | wind | 9.0 | 90 | < th | dose independent | rect. | 8 | 19 |
| 7 | 76.14 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 22 |
| 9 | 76.21 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 5 |
| 10 | 76.21 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 5 |
| 13 | 76.45 | temperature | 10.0 | 90 | > th | dose independent | rect. | 3 | 5 |
| 15 | 76.45 | temperature | 30.0 | 90 | < th | dose independent | rect. | 3 | 5 |
| 16 | 76.45 | humidity | 50.0 | 90 | > th | dose independent | rect. | 3 | 5 |
| 18 | 76.45 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 3 | 5 |
| 19 | 76.45 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 3 | 5 |
| 20 | 76.45 | temperature | 10.0 | 90 | > th | dose independent | rect. | 8 | 19 |
| 22 | 76.54 | atmosphere | 1000.0 | 90 | > th | dose dependent | rect. | 3 | 5 |
| 23 | 76.59 | radiation | 40.0 | 90 | < th | dose independent | rect. | 3 | 5 |
| 25 | 76.65 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 21 |
| 26 | 76.65 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 31 | 76.75 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 3 |
| 32 | 76.75 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 37 | 76.91 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 38 | 76.95 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 42 | 76.99 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 44 | 77.00 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 46 | 77.00 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 47 | 77.00 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 50 | 77.00 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 52 | 77.00 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 55 | 77.00 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 58 | 77.03 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 60 | 77.05 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 2 | 7 |
| 61 | 77.06 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 87 | 77.22 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 97 | 77.57 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 98 | 77.57 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 9 |
| 108 | 77.70 | wind | 9.0 | 10 | < th | dose independent | rect. | 8 | 20 |
| 113 | 77.77 | wind | 9.0 | 90 | < th | dose dependent | rect. | 3 | 5 |
| 127 | 77.78 | radiation | 10.0 | 270 | < th | dose independent | rect. | 2 | 6 |
| 137 | 77.85 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 8 | 19 |
| 154 | 77.90 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 164 | 77.97 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 9 |
| 180 | 78.06 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 2 | 11 |
| 186 | 78.11 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 192 | 78.14 | atmosphere | 1000.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 201 | 78.21 | wind | 1.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 205 | 78.22 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 227 | 78.33 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 16 |
| 245 | 78.37 | radiation | 40.0 | 90 | < th | dose independent | rect. | 3 | 19 |
| 263 | 78.47 | radiation | 30.0 | 90 | < th | dose independent | rect. | 3 | 8 |
| 319 | 78.64 | humidity | 70.0 | 90 | > th | dose independent | rect. | 3 | 8 |
| 370 | 78.82 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 20 | 6 |
| 376 | 78.87 | wind | 9.0 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 377 | 78.87 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 380 | 78.87 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 382 | 78.87 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 383 | 78.87 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 384 | 78.87 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 9 | 20 |
| 423 | 79.03 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 3 | 5 |
| 424 | 79.04 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 3 | 5 |
| 426 | 79.08 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 5 |
| 428 | 79.09 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 2 |
| 429 | 79.10 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 438 | 79.13 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 2 | 15 |
| 443 | 79.17 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 4 | 18 |
| 454 | 79.21 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 11 | 10 |
| 456 | 79.21 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 507 | 79.44 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 22 | 3 |
| 514 | 79.45 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 559 | 79.58 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 568 | 79.62 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 572 | 79.63 | wind | 9.0 | 90 | < th | dose dependent | rect. | 8 | 19 |
| 578 | 79.67 | wind | 9.0 | 10 | < th | dose dependent | rect. | 4 | 5 |
| 583 | 79.68 | radiation | 40.0 | 270 | < th | dose independent | rect. | 11 | 20 |
| 598 | 79.71 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 614 | 79.80 | temperature | 15.0 | 270 | > th | dose independent | rect. | 11 | 10 |
| 639 | 79.86 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 15 | 17 |
| 645 | 79.89 | humidity | 50.0 | 270 | > th | dose independent | rect. | 21 | 14 |
| 658 | 79.91 | wind | 9.0 | 270 | < th | dose independent | rect. | 21 | 14 |
| 678 | 79.96 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 7 |
| 679 | 79.96 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 4 | 19 |
| 681 | 79.97 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 14 |
| 682 | 79.97 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 14 |
| 699 | 79.99 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 8 | 2 |
| 721 | 80.03 | temperature | 15.0 | 90 | > th | dose independent | rect. | 15 | 17 |
| 764 | 80.16 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 9 |
| 770 | 80.18 | humidity | 50.0 | 270 | > th | dose independent | rect. | 15 | 15 |
| 774 | 80.19 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 13 | 19 |
| 785 | 80.23 | radiation | 40.0 | 90 | < th | dose independent | rect. | 13 | 19 |
| 800 | 80.27 | humidity | 70.0 | 90 | > th | dose independent | rect. | 3 | 19 |
| 821 | 80.33 | radiation | 20.0 | 270 | < th | dose independent | rect. | 15 | 15 |
| 841 | 80.39 | temperature | 15.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 860 | 80.43 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 19 |
| 864 | 80.44 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 4 | 18 |
| 866 | 80.45 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 8 | 2 |
| 870 | 80.46 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 7 |
| 872 | 80.46 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 7 |
| 875 | 80.47 | humidity | 50.0 | 90 | > th | dose independent | rect. | 15 | 17 |
| 876 | 80.47 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 3 | 5 |
| 901 | 80.51 | wind | 9.0 | 90 | < th | dose independent | rect. | 8 | 7 |
| 913 | 80.54 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 9 |
| 955 | 80.61 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 22 | 6 |
| 958 | 80.62 | radiation | 1.0 | 270 | > th | dose independent | sin | 2 | NA |
| 959 | 80.62 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 23 | 1 |
| 968 | 80.65 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 20 | 6 |
| 995 | 80.69 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 14 |
| 998 | 80.69 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 14 |