BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0534000 Os12g0534000|AK058923
(148 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0534000 Similar to Dehydroquinate dehydratase/shikimat... 303 2e-83
Os01g0375200 Similar to Dehydroquinate dehydratase/shikimat... 176 5e-45
Os01g0375500 Dehydroquinase class I domain containing protein 161 1e-40
>Os12g0534000 Similar to Dehydroquinate dehydratase/shikimate:NADP oxidoreductase
(EC 4.2.1.10) (EC 1.1.1.25)
Length = 148
Score = 303 bits (777), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 148/148 (100%), Positives = 148/148 (100%)
Query: 1 AIEDGIRGKALAYGAKEKGARVVIANRTFARAQELGNLLGAPALTLAELENYHPEEEMIL 60
AIEDGIRGKALAYGAKEKGARVVIANRTFARAQELGNLLGAPALTLAELENYHPEEEMIL
Sbjct: 1 AIEDGIRGKALAYGAKEKGARVVIANRTFARAQELGNLLGAPALTLAELENYHPEEEMIL 60
Query: 61 ANTTAIGMHPNVNETPLSKQALKSYAVVFDAVYTPKETRLLREAAECGATVVSGLEMFIR 120
ANTTAIGMHPNVNETPLSKQALKSYAVVFDAVYTPKETRLLREAAECGATVVSGLEMFIR
Sbjct: 61 ANTTAIGMHPNVNETPLSKQALKSYAVVFDAVYTPKETRLLREAAECGATVVSGLEMFIR 120
Query: 121 QAMGQFEHFTGMPAPDSLMRDIVLTKIQ 148
QAMGQFEHFTGMPAPDSLMRDIVLTKIQ
Sbjct: 121 QAMGQFEHFTGMPAPDSLMRDIVLTKIQ 148
>Os01g0375200 Similar to Dehydroquinate dehydratase/shikimate dehydrogenase
precursor (EC 1.1.1.25) (EC 4.2.1.10) (Fragment)
Length = 572
Score = 176 bits (447), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 87/128 (67%), Positives = 103/128 (80%), Gaps = 1/128 (0%)
Query: 16 KEKGARVVIANRTFARAQELGNLLGAPALTLAELENYHPEEEMILANTTAIGMHPNVNET 75
KEKGARVV+ANRT+ +A L +G AL LAELE + PEE MILAN T++GM+PNV+ T
Sbjct: 440 KEKGARVVVANRTYEKAVSLAAAVGGHALRLAELETFRPEEGMILANATSLGMYPNVDGT 499
Query: 76 PLSKQALKSYAVVFDAVYTPKETRLLREAAECGATVVSGLEMFIRQAMGQFEHFT-GMPA 134
P+ K+AL Y VVFDAVY PK TRLLREA ECG VVSG+EMF+RQAMGQFEHFT G+ A
Sbjct: 500 PIPKKALSFYDVVFDAVYAPKVTRLLREAEECGIKVVSGVEMFVRQAMGQFEHFTGGIEA 559
Query: 135 PDSLMRDI 142
P+SLMR+I
Sbjct: 560 PESLMREI 567
>Os01g0375500 Dehydroquinase class I domain containing protein
Length = 321
Score = 161 bits (408), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 77/115 (66%), Positives = 91/115 (79%)
Query: 16 KEKGARVVIANRTFARAQELGNLLGAPALTLAELENYHPEEEMILANTTAIGMHPNVNET 75
KEKGAR+V+ANRT+ +A L +G AL LAELE + PEE MILAN T++GM+PNV+ T
Sbjct: 199 KEKGARIVVANRTYEKAVSLAAAVGGHALRLAELETFRPEEGMILANATSLGMYPNVDGT 258
Query: 76 PLSKQALKSYAVVFDAVYTPKETRLLREAAECGATVVSGLEMFIRQAMGQFEHFT 130
P+ KQAL Y VVFDAVY PK TRLLREA ECG VVSG+EMF+RQA+GQFE FT
Sbjct: 259 PIPKQALSFYDVVFDAVYAPKVTRLLREAEECGVKVVSGVEMFLRQALGQFERFT 313
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.133 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,330,067
Number of extensions: 149724
Number of successful extensions: 326
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 325
Number of HSP's successfully gapped: 3
Length of query: 148
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 56
Effective length of database: 12,232,113
Effective search space: 684998328
Effective search space used: 684998328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 151 (62.8 bits)