Os12g0534000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Dehydroquinate dehydratase/shikimate:NADP oxidoreductase (EC 4.2.1.10) (EC 1.1.1.25).
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Os12g0534000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Dehydroquinate dehydratase/shikimate:NADP oxidoreductase (EC 4.2.1.10) (EC 1.1.1.25).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.83 | 0.372 | 7.36 | 0.612 | 0.556 | 0.768 | 0.58 | -0.36 | 0.165 | 3.08 | 19.2 | 544 | -- | -- |
| 63.08 | 0.37 | 7.36 | 0.594 | 0.554 | 0.838 | 0.637 | -- | 0.156 | 3.01 | 19.2 | 530 | -- | -- |
| 63.91 | 0.372 | 7.36 | 0.603 | 0.559 | 0.744 | -- | -0.407 | 0.162 | 2.96 | 19.2 | 560 | -- | -- |
| 64.22 | 0.373 | 7.37 | 0.562 | 0.554 | 0.83 | -- | -- | 0.154 | 2.96 | 19.16 | 530 | -- | -- |
| 80.01 | 0.417 | 7.37 | 0.564 | -- | 0.87 | -- | 0.227 | 0.155 | -- | 19.22 | 369 | -- | -- |
| 76.16 | 0.409 | 7.39 | 0.294 | 0.574 | -- | 0.527 | -- | 0.0293 | 3.53 | -- | -- | -- | -- |
| 77.01 | 0.411 | 7.4 | 0.285 | 0.576 | -- | -- | -- | 0.0262 | 3.51 | -- | -- | -- | -- |
| 79.91 | 0.416 | 7.37 | 0.585 | -- | 0.859 | -- | -- | 0.161 | -- | 19.29 | 308 | -- | -- |
| 71.36 | 0.393 | 7.39 | -- | 0.568 | 0.577 | -- | -- | 0.0657 | 3.16 | 19.3 | 549 | -- | -- |
| 95.56 | 0.457 | 7.4 | 0.309 | -- | -- | -- | -- | 0.0415 | -- | -- | -- | -- | -- |
| 79.15 | 0.416 | 7.4 | -- | 0.582 | -- | -- | -- | -0.0055 | 3.51 | -- | -- | -- | -- |
| 87.68 | 0.436 | 7.39 | -- | -- | 0.591 | -- | -- | 0.0823 | -- | 19.8 | 286 | -- | -- |
| 98.08 | 0.462 | 7.4 | -- | -- | -- | -- | -- | 0.00722 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 62.79 | humidity | 80 | 14400 | > th | dose dependent | rect. | 19 | 11 |
| 15 | 63.43 | humidity | 90 | 14400 | > th | dose independent | rect. | 20 | 11 |
| 20 | 63.50 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 18 |
| 21 | 63.51 | humidity | 90 | 14400 | > th | dose dependent | sin | 8 | NA |
| 23 | 63.51 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 13 |
| 27 | 63.54 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 36 | 63.57 | temperature | 20 | 720 | < th | dose dependent | rect. | 18 | 15 |
| 39 | 63.59 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 17 |
| 47 | 63.60 | temperature | 20 | 270 | < th | dose dependent | rect. | 1 | 21 |
| 48 | 63.61 | humidity | 90 | 14400 | > th | dose independent | rect. | 24 | 10 |
| 49 | 63.61 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 20 |
| 53 | 63.62 | temperature | 20 | 720 | < th | dose dependent | sin | 10 | NA |
| 71 | 63.66 | humidity | 90 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 105 | 63.73 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 14 |
| 144 | 63.81 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 6 |
| 180 | 63.88 | temperature | 20 | 720 | > th | dose independent | sin | 4 | NA |
| 185 | 63.89 | humidity | 90 | 14400 | > th | dose independent | sin | 9 | NA |
| 192 | 63.90 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 4 |
| 286 | 64.07 | humidity | 90 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 315 | 64.11 | humidity | 90 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 359 | 64.19 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 20 |
| 397 | 64.24 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 435 | 64.29 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 22 |
| 474 | 64.34 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 23 |
| 549 | 64.43 | temperature | 20 | 720 | < th | dose dependent | no | NA | NA |
| 559 | 64.44 | temperature | 20 | 720 | < th | dose dependent | rect. | 10 | 23 |
| 577 | 64.47 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 600 | 64.50 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 619 | 64.51 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 23 |
| 620 | 64.51 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 23 |
| 665 | 64.57 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 676 | 64.58 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 23 |
| 706 | 64.63 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 727 | 64.65 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 10 |
| 753 | 64.69 | humidity | 90 | 14400 | < th | dose independent | sin | 9 | NA |
| 771 | 64.71 | temperature | 20 | 270 | < th | dose independent | sin | 2 | NA |
| 795 | 64.72 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 23 |
| 816 | 64.75 | temperature | 20 | 720 | < th | dose independent | sin | 4 | NA |
| 852 | 64.79 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 23 |
| 866 | 64.80 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 883 | 64.81 | temperature | 20 | 720 | < th | dose independent | rect. | 11 | 23 |
| 901 | 64.83 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 940 | 64.87 | humidity | 50 | 14400 | > th | dose dependent | rect. | 21 | 9 |
| 985 | 64.92 | humidity | 50 | 14400 | > th | dose dependent | rect. | 21 | 7 |