Os01g0375500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Dehydroquinase class I domain containing protein.
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Os01g0375500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Dehydroquinase class I domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 138.03 | 0.552 | 7.58 | 0.405 | 2.72 | -1.22 | -0.497 | 2.06 | -0.071 | 0.633 | 19.9 | 559 | 4.58 | 2.45 |
| 148.77 | 0.568 | 7.6 | 0.0928 | 2.83 | -1.12 | -1.01 | -- | -0.138 | 0.568 | 19.7 | 541 | 4.76 | 2.25 |
| 138.69 | 0.549 | 7.58 | 0.439 | 2.76 | -1.2 | -- | 2.3 | -0.0691 | 0.628 | 19.95 | 549 | 4.6 | 2.43 |
| 154.48 | 0.579 | 7.6 | 0.128 | 2.79 | -1.12 | -- | -- | -0.156 | 0.544 | 19.7 | 528 | 4.8 | 2.23 |
| 231.51 | 0.709 | 7.62 | 0.582 | -- | -2.93 | -- | 2.95 | -0.11 | -- | 15.91 | 636 | 4.67 | 3.27 |
| 200.34 | 0.664 | 7.68 | -0.061 | 3.6 | -- | -0.944 | -- | -0.359 | 24 | -- | -- | -- | -- |
| 204.2 | 0.669 | 7.68 | -0.0236 | 3.61 | -- | -- | -- | -0.354 | 24 | -- | -- | -- | -- |
| 207.55 | 0.671 | 7.61 | 0.529 | -- | -2.94 | -- | -- | -0.185 | -- | 16 | 634 | 4.7 | 3.88 |
| 154.21 | 0.578 | 7.62 | -- | 2.71 | -1.18 | -- | -- | -0.188 | 0.607 | 19.67 | 522 | 4.9 | 2.12 |
| 1023.31 | 1.49 | 7.6 | 0.0881 | -- | -- | -- | -- | -0.304 | -- | -- | -- | -- | -- |
| 204.22 | 0.668 | 7.68 | -- | 3.61 | -- | -- | -- | -0.352 | 24 | -- | -- | -- | -- |
| 197.51 | 0.655 | 7.61 | -- | -- | -3.25 | -- | -- | -0.335 | -- | 7.581 | 685 | 3.24 | 5.86 |
| 1023.51 | 1.49 | 7.61 | -- | -- | -- | -- | -- | -0.314 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 148.26 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 10 |
| 3 | 149.05 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 3 |
| 5 | 150.42 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 4 |
| 26 | 153.76 | radiation | 20 | 43200 | < th | dose independent | rect. | 3 | 3 |
| 27 | 153.78 | radiation | 20 | 43200 | < th | dose independent | rect. | 1 | 5 |
| 29 | 153.99 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 10 |
| 50 | 155.88 | temperature | 15 | 270 | > th | dose dependent | sin | 4 | NA |
| 76 | 157.55 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 9 |
| 78 | 157.59 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 11 |
| 82 | 157.83 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 11 |
| 86 | 158.02 | temperature | 20 | 10 | > th | dose dependent | sin | 4 | NA |
| 98 | 158.34 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 17 |
| 107 | 158.46 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 16 |
| 131 | 158.97 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 7 |
| 170 | 159.55 | temperature | 10 | 720 | > th | dose dependent | sin | 7 | NA |
| 173 | 159.59 | radiation | 10 | 4320 | < th | dose dependent | rect. | 3 | 2 |
| 182 | 159.69 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 14 |
| 183 | 159.71 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 4 |
| 240 | 160.46 | temperature | 20 | 720 | > th | dose independent | sin | 7 | NA |
| 277 | 160.85 | radiation | 1 | 14400 | < th | dose independent | rect. | 1 | 4 |
| 285 | 160.97 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 288 | 161.00 | radiation | 30 | 43200 | < th | dose independent | rect. | 17 | 14 |
| 292 | 161.01 | radiation | 10 | 4320 | < th | dose dependent | rect. | 1 | 4 |
| 308 | 161.24 | temperature | 20 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 312 | 161.30 | temperature | 25 | 720 | < th | dose dependent | sin | 6 | NA |
| 319 | 161.34 | temperature | 15 | 720 | > th | dose dependent | rect. | 22 | 13 |
| 325 | 161.42 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 15 |
| 351 | 161.75 | temperature | 20 | 720 | < th | dose independent | sin | 6 | NA |
| 422 | 162.38 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 12 |
| 451 | 162.74 | wind | 7 | 43200 | > th | dose independent | rect. | 3 | 11 |
| 452 | 162.74 | wind | 7 | 43200 | < th | dose independent | rect. | 3 | 11 |
| 455 | 162.76 | radiation | 30 | 14400 | < th | dose dependent | rect. | 3 | 2 |
| 461 | 162.79 | wind | 7 | 43200 | > th | dose independent | rect. | 1 | 13 |
| 463 | 162.80 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 15 |
| 464 | 162.80 | wind | 7 | 43200 | < th | dose independent | rect. | 21 | 18 |
| 467 | 162.81 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 15 |
| 468 | 162.81 | wind | 7 | 43200 | > th | dose independent | rect. | 21 | 18 |
| 473 | 162.82 | wind | 7 | 43200 | < th | dose independent | rect. | 1 | 13 |
| 491 | 162.91 | temperature | 30 | 10 | < th | dose dependent | sin | 1 | NA |
| 498 | 162.97 | temperature | 20 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 503 | 162.99 | temperature | 20 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 512 | 163.03 | temperature | 20 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 520 | 163.07 | temperature | 20 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 525 | 163.09 | temperature | 20 | 43200 | > th | dose independent | rect. | 18 | 5 |
| 595 | 163.29 | wind | 7 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 607 | 163.33 | wind | 7 | 43200 | < th | dose independent | sin | 5 | NA |
| 614 | 163.35 | wind | 7 | 43200 | > th | dose independent | sin | 5 | NA |
| 631 | 163.39 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 18 |
| 646 | 163.44 | wind | 7 | 43200 | < th | dose independent | rect. | 9 | 3 |
| 655 | 163.46 | radiation | 20 | 43200 | > th | dose dependent | rect. | 17 | 14 |
| 658 | 163.47 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 4 |
| 668 | 163.48 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 16 |
| 684 | 163.51 | wind | 7 | 43200 | < th | dose independent | rect. | 7 | 7 |
| 700 | 163.52 | radiation | 20 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 715 | 163.53 | wind | 7 | 43200 | > th | dose independent | rect. | 7 | 7 |
| 734 | 163.58 | temperature | 20 | 43200 | < th | dose independent | sin | 17 | NA |
| 747 | 163.61 | temperature | 20 | 43200 | > th | dose independent | sin | 17 | NA |
| 751 | 163.61 | wind | 7 | 43200 | > th | dose independent | rect. | 19 | 19 |
| 760 | 163.64 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 776 | 163.66 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 21 |
| 777 | 163.66 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 808 | 163.71 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 21 |
| 825 | 163.74 | temperature | 20 | 43200 | > th | dose independent | rect. | 6 | 18 |
| 834 | 163.75 | temperature | 20 | 43200 | < th | dose independent | rect. | 7 | 19 |
| 848 | 163.76 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 7 |
| 859 | 163.78 | temperature | 20 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 898 | 163.81 | radiation | 1 | 14400 | < th | dose dependent | rect. | 22 | 12 |
| 933 | 163.85 | temperature | 20 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 953 | 163.87 | radiation | 1 | 14400 | < th | dose dependent | sin | 9 | NA |
| 980 | 163.90 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 981 | 163.90 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 5 |