BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0375500 Os01g0375500|Os01g0375500
(321 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0375500 Dehydroquinase class I domain containing protein 591 e-169
Os01g0375200 Similar to Dehydroquinate dehydratase/shikimat... 550 e-157
Os12g0534000 Similar to Dehydroquinate dehydratase/shikimat... 152 4e-37
>Os01g0375500 Dehydroquinase class I domain containing protein
Length = 321
Score = 591 bits (1524), Expect = e-169, Method: Compositional matrix adjust.
Identities = 294/321 (91%), Positives = 294/321 (91%)
Query: 1 MGEKGLMSRVLSPKFGGYLTFGSLDATKVSAPGQPTVEELIDIYDIRRIGPDTKVLGVIA 60
MGEKGLMSRVLSPKFGGYLTFGSLDATKVSAPGQPTVEELIDIYDIRRIGPDTKVLGVIA
Sbjct: 1 MGEKGLMSRVLSPKFGGYLTFGSLDATKVSAPGQPTVEELIDIYDIRRIGPDTKVLGVIA 60
Query: 61 NPVKQSKSPVLHNTCLQSVGYNAVYLPLLADNIARFLSTYSSPDFSGFSCSLPFKVDAVQ 120
NPVKQSKSPVLHNTCLQSVGYNAVYLPLLADNIARFLSTYSSPDFSGFSCSLPFKVDAVQ
Sbjct: 61 NPVKQSKSPVLHNTCLQSVGYNAVYLPLLADNIARFLSTYSSPDFSGFSCSLPFKVDAVQ 120
Query: 121 CCHEHDPVAKSIGAISTIIRRPDGKLLGYNNDYIGAICAIEDGIGGPGSKNAAVTPXXXX 180
CCHEHDPVAKSIGAISTIIRRPDGKLLGYNNDYIGAICAIEDGIGGPGSKNAAVTP
Sbjct: 121 CCHEHDPVAKSIGAISTIIRRPDGKLLGYNNDYIGAICAIEDGIGGPGSKNAAVTPLAGR 180
Query: 181 XXXXXXXXXXXXXXXXXXXXXXXRIVVANRTYEKAVSLAAAVGGHALRLAELETFRPEEG 240
RIVVANRTYEKAVSLAAAVGGHALRLAELETFRPEEG
Sbjct: 181 LLVVVGAGGAGKAIAYGAKEKGARIVVANRTYEKAVSLAAAVGGHALRLAELETFRPEEG 240
Query: 241 MILANATSLGMYPNVDGTPIPKQALSFYDVVFDAVYAPKVTRLLREAEECGVKVVSGVEM 300
MILANATSLGMYPNVDGTPIPKQALSFYDVVFDAVYAPKVTRLLREAEECGVKVVSGVEM
Sbjct: 241 MILANATSLGMYPNVDGTPIPKQALSFYDVVFDAVYAPKVTRLLREAEECGVKVVSGVEM 300
Query: 301 FLRQALGQFERFTNGIEGFDS 321
FLRQALGQFERFTNGIEGFDS
Sbjct: 301 FLRQALGQFERFTNGIEGFDS 321
>Os01g0375200 Similar to Dehydroquinate dehydratase/shikimate dehydrogenase
precursor (EC 1.1.1.25) (EC 4.2.1.10) (Fragment)
Length = 572
Score = 550 bits (1416), Expect = e-157, Method: Compositional matrix adjust.
Identities = 266/321 (82%), Positives = 287/321 (89%)
Query: 1 MGEKGLMSRVLSPKFGGYLTFGSLDATKVSAPGQPTVEELIDIYDIRRIGPDTKVLGVIA 60
MGEKGLMSRVLSPKFGGYLTFG+LDATK+SAPGQPTV+EL+DIY+IRRIGPDTKVLG+IA
Sbjct: 242 MGEKGLMSRVLSPKFGGYLTFGTLDATKISAPGQPTVKELLDIYNIRRIGPDTKVLGLIA 301
Query: 61 NPVKQSKSPVLHNTCLQSVGYNAVYLPLLADNIARFLSTYSSPDFSGFSCSLPFKVDAVQ 120
NPVKQSKSP+LHN CLQS+GYNAVYLPLLAD++ARFLSTYSSPDFSGFSCSLPFKVDAVQ
Sbjct: 302 NPVKQSKSPILHNKCLQSIGYNAVYLPLLADDLARFLSTYSSPDFSGFSCSLPFKVDAVQ 361
Query: 121 CCHEHDPVAKSIGAISTIIRRPDGKLLGYNNDYIGAICAIEDGIGGPGSKNAAVTPXXXX 180
CCHEHDPVAKSIGAI+TIIRRPDGKL+GYN DYIGAI AIEDGIGGPGSK+AA++P
Sbjct: 362 CCHEHDPVAKSIGAINTIIRRPDGKLVGYNTDYIGAISAIEDGIGGPGSKDAAISPLAGR 421
Query: 181 XXXXXXXXXXXXXXXXXXXXXXXRIVVANRTYEKAVSLAAAVGGHALRLAELETFRPEEG 240
R+VVANRTYEKAVSLAAAVGGHALRLAELETFRPEEG
Sbjct: 422 LVVVVGAGGAGKAIAYGAKEKGARVVVANRTYEKAVSLAAAVGGHALRLAELETFRPEEG 481
Query: 241 MILANATSLGMYPNVDGTPIPKQALSFYDVVFDAVYAPKVTRLLREAEECGVKVVSGVEM 300
MILANATSLGMYPNVDGTPIPK+ALSFYDVVFDAVYAPKVTRLLREAEECG+KVVSGVEM
Sbjct: 482 MILANATSLGMYPNVDGTPIPKKALSFYDVVFDAVYAPKVTRLLREAEECGIKVVSGVEM 541
Query: 301 FLRQALGQFERFTNGIEGFDS 321
F+RQA+GQFE FT GIE +S
Sbjct: 542 FVRQAMGQFEHFTGGIEAPES 562
>Os12g0534000 Similar to Dehydroquinate dehydratase/shikimate:NADP oxidoreductase
(EC 4.2.1.10) (EC 1.1.1.25)
Length = 148
Score = 152 bits (383), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 72/110 (65%), Positives = 86/110 (78%)
Query: 204 RIVVANRTYEKAVSLAAAVGGHALRLAELETFRPEEGMILANATSLGMYPNVDGTPIPKQ 263
R+V+ANRT+ +A L +G AL LAELE + PEE MILAN T++GM+PNV+ TP+ KQ
Sbjct: 21 RVVIANRTFARAQELGNLLGAPALTLAELENYHPEEEMILANTTAIGMHPNVNETPLSKQ 80
Query: 264 ALSFYDVVFDAVYAPKVTRLLREAEECGVKVVSGVEMFLRQALGQFERFT 313
AL Y VVFDAVY PK TRLLREA ECG VVSG+EMF+RQA+GQFE FT
Sbjct: 81 ALKSYAVVFDAVYTPKETRLLREAAECGATVVSGLEMFIRQAMGQFEHFT 130
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.138 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,006,773
Number of extensions: 389632
Number of successful extensions: 886
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 884
Number of HSP's successfully gapped: 3
Length of query: 321
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 220
Effective length of database: 11,762,187
Effective search space: 2587681140
Effective search space used: 2587681140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)