Os01g0375200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Dehydroquinate dehydratase/shikimate dehydrogenase precursor (EC 1.1.1.25) (EC 4.2.1.10) (Fragment).
FiT-DB / Search/ Help/ Sample detail
|
Os01g0375200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Dehydroquinate dehydratase/shikimate dehydrogenase precursor (EC 1.1.1.25) (EC 4.2.1.10) (Fragment).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67.25 | 0.385 | 7.76 | 0.421 | 0.425 | -1.17 | 0.744 | 0.0536 | 0.224 | 20.2 | 21.5 | 4028 | -- | -- |
| 67.23 | 0.382 | 7.76 | 0.4 | 0.426 | -1.16 | 0.732 | -- | 0.219 | 20.2 | 21.5 | 3927 | -- | -- |
| 68.61 | 0.386 | 7.75 | 0.406 | 0.435 | -1.14 | -- | 0.119 | 0.229 | 19.6 | 21.6 | 4017 | -- | -- |
| 68.65 | 0.386 | 7.76 | 0.377 | 0.436 | -1.15 | -- | -- | 0.217 | 19.6 | 21.6 | 4018 | -- | -- |
| 78.55 | 0.413 | 7.74 | 0.414 | -- | -1.11 | -- | 0.223 | 0.238 | -- | 21.78 | 4167 | -- | -- |
| 101.18 | 0.472 | 7.85 | -0.295 | 0.43 | -- | 0.597 | -- | -0.173 | 19.6 | -- | -- | -- | -- |
| 101.92 | 0.473 | 7.85 | -0.307 | 0.44 | -- | -- | -- | -0.171 | 19.1 | -- | -- | -- | -- |
| 77.48 | 0.41 | 7.76 | 0.222 | -- | -1.03 | -- | -- | 0.184 | -- | 22.1 | 2887 | -- | -- |
| 68.68 | 0.386 | 7.77 | -- | 0.42 | -0.962 | -- | -- | 0.158 | 19.6 | 22.1 | 2828 | -- | -- |
| 112.13 | 0.495 | 7.84 | -0.315 | -- | -- | -- | -- | -0.179 | -- | -- | -- | -- | -- |
| 104.4 | 0.478 | 7.84 | -- | 0.444 | -- | -- | -- | -0.137 | 19 | -- | -- | -- | -- |
| 78.13 | 0.412 | 7.76 | -- | -- | -0.972 | -- | -- | 0.156 | -- | 22.15 | 2849 | -- | -- |
| 114.76 | 0.5 | 7.83 | -- | -- | -- | -- | -- | -0.144 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 66.58 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 2 | 66.73 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 3 |
| 3 | 66.74 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 3 |
| 5 | 66.98 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 18 | 67.84 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 12 |
| 23 | 67.98 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 12 |
| 27 | 68.00 | temperature | 15 | 4320 | > th | dose dependent | rect. | 2 | 1 |
| 85 | 68.37 | temperature | 20 | 4320 | < th | dose independent | sin | 13 | NA |
| 90 | 68.41 | temperature | 20 | 4320 | > th | dose independent | sin | 13 | NA |
| 126 | 68.72 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 11 |
| 129 | 68.73 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 2 |
| 133 | 68.75 | temperature | 25 | 4320 | < th | dose dependent | rect. | 20 | 7 |
| 150 | 68.81 | temperature | 15 | 1440 | > th | dose dependent | rect. | 16 | 14 |
| 201 | 68.93 | temperature | 25 | 4320 | < th | dose dependent | rect. | 2 | 1 |
| 273 | 69.09 | temperature | 20 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 295 | 69.14 | temperature | 25 | 4320 | < th | dose dependent | sin | 14 | NA |
| 300 | 69.15 | temperature | 15 | 1440 | > th | dose dependent | sin | 13 | NA |
| 703 | 69.66 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 786 | 69.74 | temperature | 20 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 808 | 69.77 | temperature | 20 | 4320 | < th | dose independent | rect. | 3 | 4 |
| 946 | 69.91 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 4 |