BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0503000 Os12g0503000|AK069916
(418 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0503000 Similar to Allantoin permease 766 0.0
Os12g0502800 Similar to Ureide permease 1 (AtUPS1) 524 e-149
Os12g0503300 Similar to Ureide permease 2 (AtUPS2) 405 e-113
>Os12g0503000 Similar to Allantoin permease
Length = 418
Score = 766 bits (1979), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/418 (91%), Positives = 381/418 (91%)
Query: 1 MYLVKDIGGAIALMGVSLVLLGTWPVVLAVLERRGRLPQHTYLDYSITNFLAALLVAFTF 60
MYLVKDIGGAIALMGVSLVLLGTWPVVLAVLERRGRLPQHTYLDYSITNFLAALLVAFTF
Sbjct: 1 MYLVKDIGGAIALMGVSLVLLGTWPVVLAVLERRGRLPQHTYLDYSITNFLAALLVAFTF 60
Query: 61 GQIGADTPETPNFLTQLTQMQDNWPSILFAMSGGIFNGLGTLATQYGWAFVGLSVTEVMA 120
GQIGADTPETPNFLTQLTQMQDNWPSILFAMSGGIFNGLGTLATQYGWAFVGLSVTEVMA
Sbjct: 61 GQIGADTPETPNFLTQLTQMQDNWPSILFAMSGGIFNGLGTLATQYGWAFVGLSVTEVMA 120
Query: 121 SSLKVVIGTTLNYFLDGRINKAEILFPGVGCFLIAACLGSLVHSSNAADNQEKLSSAMVN 180
SSLKVVIGTTLNYFLDGRINKAEILFPGVGCFLIAACLGSLVHSSNAADNQEKLSSAMVN
Sbjct: 121 SSLKVVIGTTLNYFLDGRINKAEILFPGVGCFLIAACLGSLVHSSNAADNQEKLSSAMVN 180
Query: 181 HSNTNGDTENEELTKHLLEIEQPKDCXXXXXXXXXXXXXXXKLEAGTADFLVDLEGKRSI 240
HSNTNGDTENEELTKHLLEIEQPKDC KLEAGTADFLVDLEGKRSI
Sbjct: 181 HSNTNGDTENEELTKHLLEIEQPKDCEEQEPEVAPAAQAVEKLEAGTADFLVDLEGKRSI 240
Query: 241 KVLGSNTFLGLGIVTFAGVSYSLFSPAFNLATNDQWHTLGEGVPHMVVYTAFFYFSLACF 300
KVLGSNTFLGLGIVTFAGVSYSLFSPAFNLATNDQWHTLGEGVPHMVVYTAFFYFSLACF
Sbjct: 241 KVLGSNTFLGLGIVTFAGVSYSLFSPAFNLATNDQWHTLGEGVPHMVVYTAFFYFSLACF 300
Query: 301 AIGIALNIWFLYHPMVGVPRSSLTAYLKDWKGRDLALVAGMVCGLXXXXXXXXXXXXXXX 360
AIGIALNIWFLYHPMVGVPRSSLTAYLKDWKGRDLALVAGMVCGL
Sbjct: 301 AIGIALNIWFLYHPMVGVPRSSLTAYLKDWKGRDLALVAGMVCGLGNAFQFMAGQAAGYA 360
Query: 361 XXXXXXXLPLVSTVWGIVLFGEYRRSSRRTYTLLGSMLFMFVVAMVILMASSAHRRPL 418
LPLVSTVWGIVLFGEYRRSSRRTYTLLGSMLFMFVVAMVILMASSAHRRPL
Sbjct: 361 AADAVQALPLVSTVWGIVLFGEYRRSSRRTYTLLGSMLFMFVVAMVILMASSAHRRPL 418
>Os12g0502800 Similar to Ureide permease 1 (AtUPS1)
Length = 410
Score = 524 bits (1350), Expect = e-149, Method: Compositional matrix adjust.
Identities = 260/416 (62%), Positives = 309/416 (74%), Gaps = 10/416 (2%)
Query: 1 MYLVKDIGGAIALMGVSLVLLGTWPVVLAVLERRGRLPQHTYLDYSITNFLAALLVAFTF 60
MY+++D GGAIALM SL LGTWP VL +LERRGRLPQHTYLDYSITN LAA+L+A TF
Sbjct: 1 MYIIEDKGGAIALMLASLFFLGTWPAVLTLLERRGRLPQHTYLDYSITNLLAAVLIALTF 60
Query: 61 GQIGADTPETPNFLTQLTQMQDNWPSILFAMSGGIFNGLGTLATQYGWAFVGLSVTEVMA 120
GQ+G P PNF TQL+Q DNWPS+LFAM+GG+ +G L+TQY WA+VGLSVTEV++
Sbjct: 61 GQLGDSKPNMPNFFTQLSQ--DNWPSVLFAMAGGVVLSIGNLSTQYAWAYVGLSVTEVIS 118
Query: 121 SSLKVVIGTTLNYFLDGRINKAEILFPGVGCFLIAACLGSLVHSSNAADNQEKLS-SAMV 179
SS+ VVIGTTLNYFLD RIN+AEILFPGV CFL+A LGS VH+SNAADN+EKL+ S +
Sbjct: 119 SSMVVVIGTTLNYFLDNRINRAEILFPGVACFLVAVILGSAVHASNAADNEEKLNGSTNI 178
Query: 180 NHSNTNGDTENEELTKHLLEIEQPKDCXXXXXXXXXXXXXXXKLEAGTADFLVDLEGKRS 239
NG E K ++E + PKD K EAGTA++L++LE +RS
Sbjct: 179 YKLGENGSVEP---NKEVIEKDAPKDLENGASATKYVA----KAEAGTAEYLIELEERRS 231
Query: 240 IKVLGSNTFLGLGIVTFAGVSYSLFSPAFNLATNDQWHTLGEGVPHMVVYTAFFYFSLAC 299
IKV GS+TF+GLGIV F+GV +SLFSPAFNLATNDQWHTL +GVPH+VVYTAFFYFS++C
Sbjct: 232 IKVFGSSTFIGLGIVFFSGVCFSLFSPAFNLATNDQWHTLKQGVPHLVVYTAFFYFSISC 291
Query: 300 FAIGIALNIWFLYHPMVGVPRSSLTAYLKDWKGRDLALVAGMVCGLXXXXXXXXXXXXXX 359
F IGI LNI FLY PM GVP+SS AYL DW+GR AL+AG +CG
Sbjct: 292 FVIGIGLNILFLYRPMAGVPKSSFKAYLNDWEGRQWALLAGFLCGFGNGFQFMGGQAAGY 351
Query: 360 XXXXXXXXLPLVSTVWGIVLFGEYRRSSRRTYTLLGSMLFMFVVAMVILMASSAHR 415
LPLVST WGI+LFGEYR+SSR+TY LLG MLFMF+VA+ +LMASS HR
Sbjct: 352 AAADAVQALPLVSTFWGILLFGEYRKSSRKTYILLGFMLFMFIVAVAVLMASSGHR 407
>Os12g0503300 Similar to Ureide permease 2 (AtUPS2)
Length = 1007
Score = 405 bits (1042), Expect = e-113, Method: Compositional matrix adjust.
Identities = 199/345 (57%), Positives = 251/345 (72%), Gaps = 17/345 (4%)
Query: 1 MYLVKDIGGAIALMGVSLVLLGTWPVVLAVLERRGRLPQHTYLDYSITNFLAALLVAFTF 60
M++V+D GGA+ALM SL+ LGTWP +L +LERRGRLPQHTYLDYS+TN LAA ++A TF
Sbjct: 606 MFVVEDRGGAVALMVASLLFLGTWPALLTLLERRGRLPQHTYLDYSVTNLLAAAVIAITF 665
Query: 61 GQIGADTPETPNFLTQLTQMQDNWPSILFAMSGGIFNGLGTLATQYGWAFVGLSVTEVMA 120
GQ+G P P+F TQLTQ DNWPS+LFAM+GGI +G L +QY WAFVGLSVT ++
Sbjct: 666 GQVGETRPSMPSFFTQLTQ--DNWPSVLFAMAGGIALSIGHLISQYAWAFVGLSVTNIIC 723
Query: 121 SSLKVVIGTTLNYFLDGRINKAEILFPGVGCFLIAACLGSLVHSSNAADNQEKLSSAMVN 180
SSL VV+GTT+NYFLDGRIN+AEILFPGV CFL+A LGS VHSSNA D +EKLS +
Sbjct: 724 SSLAVVLGTTMNYFLDGRINRAEILFPGVACFLVAIFLGSAVHSSNAKDEEEKLSMSRGI 783
Query: 181 HSNTNGDTENEELTKHLLEIEQPKDCXXXXXXXXXXXXXXXKLEAGTADFLVDLEGKRSI 240
+++ + +L + E+E +D + GTA+F+V +E +RSI
Sbjct: 784 ELSSDVADQGVKLLPNQEELENGED---------------DDFDTGTAEFIVQVEKRRSI 828
Query: 241 KVLGSNTFLGLGIVTFAGVSYSLFSPAFNLATNDQWHTLGEGVPHMVVYTAFFYFSLACF 300
KV GS+ +LGLG+V AGV +SLFSPA NLATNDQW TL + VPH+ VYTAFFYFS++CF
Sbjct: 829 KVFGSSRWLGLGMVLLAGVCFSLFSPAINLATNDQWRTLRDSVPHLTVYTAFFYFSVSCF 888
Query: 301 AIGIALNIWFLYHPMVGVPRSSLTAYLKDWKGRDLALVAGMVCGL 345
A+GI LN LY P+ GVP S++ AY DW GR AL+AG++CG
Sbjct: 889 AVGIGLNARLLYRPVAGVPPSTIGAYAGDWNGRHWALLAGLLCGF 933
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.139 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,827,224
Number of extensions: 434946
Number of successful extensions: 1232
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1225
Number of HSP's successfully gapped: 3
Length of query: 418
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 315
Effective length of database: 11,657,759
Effective search space: 3672194085
Effective search space used: 3672194085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 157 (65.1 bits)