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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0503300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Ureide permease 2 (AtUPS2).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.99 (0.0221) R2 : 0.000663
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0256 (0.0466) R2dN8 : 0.000856 R2N8 : 0.000663
σ : 0.417
deviance : 79.85
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
77.76 0.414 2.99 0.0312 0.0359 0.15 0.145 -1.08 0.0488 11.8 59 129 -- --
79.25 0.418 2.99 0.0417 0.0396 0.118 -0.0361 -- 0.0415 9.67 57 65 -- --
77.83 0.411 2.99 0.0365 0.0381 0.15 -- -0.998 0.048 10.4 59 128 -- --
79.09 0.417 2.99 0.0429 0.0413 0.164 -- -- 0.041 9.42 54.87 25 -- --
77.92 0.411 2.99 0.0353 -- 0.156 -- -1.01 0.0494 -- 58.91 128 -- --
79.62 0.418 2.99 0.044 0.0521 -- -0.056 -- 0.0309 11.5 -- -- -- --
79.64 0.418 2.99 0.0417 0.0523 -- -- -- 0.0306 11.4 -- -- -- --
79.19 0.416 2.99 0.0427 -- 0.168 -- -- 0.0415 -- 54.87 25 -- --
79.14 0.417 2.99 -- 0.0413 0.163 -- -- 0.0362 9.34 54.87 25 -- --
79.81 0.417 2.99 0.0404 -- -- -- -- 0.0301 -- -- -- -- --
79.68 0.418 2.99 -- 0.0519 -- -- -- 0.026 11.3 -- -- -- --
79.24 0.416 2.99 -- -- 0.168 -- -- 0.0367 -- 54.87 25 -- --
79.85 0.417 2.99 -- -- -- -- -- 0.0256 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 74.82 temperature 20.0 10 > th dose dependent rect. 2 1
3 74.86 humidity 90.0 30 > th dose independent rect. 2 1
4 74.86 humidity 80.0 30 > th dose dependent rect. 2 1
5 74.87 wind 9.0 30 < th dose independent rect. 3 23
6 74.88 wind 3.0 30 < th dose independent rect. 2 1
8 74.88 wind 3.0 30 < th dose dependent rect. 2 1
13 74.88 humidity 60.0 30 > th dose dependent rect. 2 1
20 74.89 atmosphere 1015.0 30 < th dose dependent rect. 2 1
24 74.90 temperature 10.0 30 > th dose independent rect. 2 1
26 74.90 temperature 30.0 30 < th dose independent rect. 2 1
27 74.90 humidity 50.0 30 > th dose independent rect. 2 1
30 74.90 atmosphere 995.0 30 > th dose independent rect. 2 1
31 74.90 atmosphere 1010.0 30 < th dose independent rect. 2 1
33 74.90 radiation 1.0 30 < th dose independent rect. 2 1
38 74.90 precipitation 0.1 30 < th dose independent rect. 2 1
39 74.90 temperature 10.0 30 > th dose independent rect. 3 23
40 74.90 radiation 1.0 30 < th dose dependent rect. 2 1
45 74.90 precipitation 0.1 30 < th dose dependent rect. 2 1
49 74.94 atmosphere 1005.0 30 > th dose independent rect. 2 1
50 74.94 atmosphere 995.0 30 > th dose dependent rect. 2 1
60 75.01 temperature 30.0 30 < th dose dependent rect. 2 1
68 75.06 wind 1.0 30 > th dose independent rect. 2 1
96 75.13 humidity 60.0 720 > th dose independent rect. 3 8
107 75.70 wind 1.0 720 < th dose independent rect. 7 1
109 75.77 wind 1.0 720 < th dose dependent rect. 7 1
111 75.84 humidity 70.0 4320 > th dose independent rect. 21 1
112 75.88 humidity 60.0 720 > th dose independent rect. 19 16
113 75.94 wind 1.0 30 < th dose dependent rect. 7 3
114 75.95 wind 1.0 30 < th dose dependent rect. 7 5
119 76.10 humidity 70.0 4320 > th dose independent rect. 20 8
120 76.12 humidity 60.0 270 < th dose independent rect. 8 3
135 76.14 humidity 70.0 4320 > th dose independent rect. 21 3
136 76.14 humidity 50.0 10 > th dose independent rect. 3 23
152 76.19 humidity 70.0 4320 > th dose independent rect. 21 5
154 76.20 humidity 70.0 4320 > th dose independent rect. 20 11
166 76.29 wind 1.0 30 < th dose independent rect. 7 3
167 76.29 humidity 70.0 4320 < th dose independent rect. 20 11
173 76.31 wind 9.0 4320 > th dose dependent rect. 14 1
177 76.34 humidity 70.0 4320 < th dose dependent rect. 20 11
181 76.39 humidity 50.0 4320 > th dose independent rect. 16 1
191 76.47 wind 1.0 30 < th dose dependent rect. 7 20
197 76.56 radiation 20.0 720 < th dose independent rect. 23 8
199 76.58 wind 1.0 10 < th dose dependent rect. 7 1
204 76.63 humidity 70.0 4320 < th dose independent rect. 20 1
214 76.63 humidity 70.0 4320 < th dose dependent rect. 20 1
229 76.68 wind 1.0 30 < th dose independent rect. 7 20
230 76.70 humidity 60.0 270 < th dose independent sin 8 NA
232 76.73 wind 1.0 10 < th dose independent rect. 7 1
242 76.82 precipitation 0.1 30 < th dose independent rect. 3 23
244 76.82 precipitation 0.1 30 < th dose dependent rect. 3 23
253 76.89 humidity 60.0 270 > th dose independent sin 8 NA
254 76.90 wind 9.0 4320 > th dose independent rect. 14 1
262 76.95 humidity 60.0 270 > th dose independent rect. 3 12
264 76.97 humidity 60.0 270 < th dose dependent rect. 8 3
297 77.00 radiation 20.0 720 < th dose dependent rect. 21 10
323 77.07 atmosphere 995.0 30 > th dose independent rect. 3 23
346 77.12 wind 9.0 4320 < th dose independent rect. 3 1
347 77.12 radiation 1.0 270 < th dose independent rect. 8 1
350 77.12 radiation 1.0 270 < th dose dependent rect. 8 1
362 77.18 radiation 10.0 720 > th dose dependent rect. 5 2
374 77.19 humidity 60.0 30 < th dose dependent sin 8 NA
379 77.20 humidity 70.0 4320 < th dose dependent rect. 20 13
397 77.22 wind 9.0 4320 < th dose independent rect. 14 2
398 77.22 atmosphere 1010.0 10 > th dose dependent rect. 12 1
441 77.24 humidity 50.0 10 > th dose independent sin 8 NA
443 77.24 radiation 20.0 720 < th dose independent rect. 6 1
451 77.25 radiation 20.0 720 < th dose dependent rect. 3 4
453 77.26 wind 1.0 1440 > th dose independent rect. 7 1
455 77.26 humidity 60.0 270 < th dose dependent sin 8 NA
473 77.29 wind 1.0 720 > th dose independent rect. 3 12
479 77.29 temperature 10.0 720 > th dose dependent rect. 3 4
514 77.32 humidity 60.0 90 > th dose independent rect. 3 14
545 77.33 wind 1.0 720 > th dose independent rect. 6 9
557 77.35 humidity 60.0 30 < th dose dependent rect. 9 3
638 77.38 wind 1.0 720 > th dose independent rect. 3 21
643 77.38 humidity 70.0 4320 < th dose dependent rect. 6 3
670 77.39 wind 1.0 720 > th dose independent rect. 3 6
676 77.40 wind 9.0 43200 < th dose independent rect. 5 3
677 77.40 radiation 10.0 720 < th dose independent rect. 3 4
724 77.43 temperature 15.0 720 > th dose independent rect. 3 8
725 77.43 radiation 20.0 720 < th dose independent rect. 21 10
726 77.43 temperature 15.0 720 > th dose independent rect. 23 16
777 77.46 humidity 50.0 4320 < th dose independent rect. 16 1
784 77.47 humidity 60.0 10 > th dose independent rect. 6 12
802 77.48 wind 9.0 43200 < th dose independent rect. 7 1
806 77.48 humidity 60.0 10 > th dose independent rect. 4 14
807 77.48 radiation 40.0 30 < th dose independent rect. 3 23
827 77.49 atmosphere 1010.0 30 > th dose dependent sin 23 NA
877 77.50 humidity 70.0 4320 > th dose independent rect. 4 3
995 77.52 radiation 20.0 720 < th dose dependent rect. 5 2