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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0503000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Allantoin permease.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.53 (0.0675) R2 : 0.698
β1 : -0.195 (0.312) R2dD : 0.000777 R2D : -0.00715
β2 : 0.554 (0.122) R2dC : 0.0138 R2C : -0.0324
β3 : -2.24 (0.152) R2dE : 0.248 R2E : 0.44
β4 : -2.26 (0.482) R2dD*C : 0.0147 R2D*C : -0.0344
β5 : 6.68 (0.672) R2dD*E : 0.222 R2D*E : 0.438
γ1 : 0.298 (0.143) R2dN8 : 0.00691 R2N8 : -0.0634
σ : 0.945
deviance : 404.25
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_____
C
peak time of C : 1.99
E
wheather : temperature
threshold : 25
memory length : 4320
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 10
open length of G : 1.06

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
404.25 0.945 3.53 -0.195 0.554 -2.24 -2.26 6.68 0.298 1.99 25 4320 10 1.06
632.36 1.17 3.77 -0.241 1.15 -3.05 -2.18 -- 0.355 2.1 24.81 7003 10.4 0.899
423.02 0.958 3.53 -0.121 0.571 -2.24 -- 6.66 0.284 2.08 25 4314 9.99 1.11
555.44 1.1 3.84 -0.634 0.675 -3.48 -- -- 0.264 2.09 24.8 31391 11.3 1.09
441.47 0.979 3.53 -0.139 -- -2.23 -- 6.66 0.285 -- 25 4327 9.99 1.1
733.97 1.27 4.2 -4.41 0.491 -- -2.38 -- -1.47 2.02 -- -- -- --
755.23 1.29 4.19 -4.34 0.501 -- -- -- -1.46 2.65 -- -- -- --
470.51 1.01 3.81 0.0795 -- -4.41 -- -- 0.247 -- 22.76 33616 13.2 2.23
541.25 1.08 3.84 -- 0.703 -3.49 -- -- 0.288 2 24.08 31305 12.3 1.18
769.91 1.3 4.19 -4.32 -- -- -- -- -1.44 -- -- -- -- --
1251.89 1.66 4.08 -- 0.417 -- -- -- -0.972 2.53 -- -- -- --
469.65 1.01 3.83 -- -- -4.44 -- -- 0.22 -- 22.79 32020 13.2 2.28
1262.1 1.66 4.08 -- -- -- -- -- -0.964 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 353.40 temperature 15 43200 < th dose independent rect. 10 1
2 353.97 temperature 15 43200 > th dose independent rect. 10 1
3 354.35 temperature 15 43200 > th dose independent rect. 9 5
12 356.88 temperature 15 43200 > th dose independent rect. 2 1
13 356.96 temperature 15 43200 < th dose independent rect. 9 5
15 357.43 temperature 15 43200 < th dose independent rect. 1 2
18 357.78 temperature 15 43200 < th dose independent rect. 21 6
21 358.07 temperature 15 43200 > th dose independent rect. 9 19
29 358.47 temperature 15 43200 > th dose independent rect. 19 9
32 358.51 temperature 15 43200 > th dose independent rect. 21 7
55 359.42 temperature 15 43200 < th dose independent rect. 21 17
62 359.62 temperature 15 43200 < th dose independent rect. 24 14
63 359.62 temperature 15 43200 < th dose independent rect. 21 15
75 359.79 temperature 15 43200 > th dose independent rect. 21 18
92 360.05 radiation 20 43200 < th dose independent rect. 17 1
95 360.07 temperature 15 43200 < th dose independent rect. 24 12
105 360.15 temperature 15 43200 < th dose independent rect. 9 20
114 360.26 temperature 15 43200 < th dose independent rect. 9 18
119 360.31 temperature 15 43200 > th dose independent rect. 13 15
133 360.38 radiation 20 43200 < th dose independent rect. 17 10
147 360.51 temperature 15 43200 > th dose independent rect. 24 15
155 360.58 radiation 20 43200 < th dose independent rect. 17 8
203 360.98 temperature 15 43200 < th dose independent sin 11 NA
213 361.04 temperature 15 43200 > th dose independent sin 13 NA
284 361.52 temperature 15 43200 > th dose independent rect. 13 23
295 361.58 temperature 15 43200 > th dose independent no NA NA
308 361.69 temperature 15 43200 > th dose independent rect. 24 23
311 361.72 radiation 30 43200 > th dose dependent rect. 16 16
365 362.09 temperature 15 43200 < th dose independent rect. 13 16
379 362.21 radiation 30 43200 > th dose dependent rect. 7 1
435 362.51 temperature 15 43200 < th dose independent rect. 13 23
457 362.71 temperature 15 43200 < th dose independent rect. 4 23
472 362.87 temperature 15 43200 < th dose independent no NA NA
506 363.19 temperature 15 43200 > th dose independent sin 4 NA
542 363.45 radiation 40 43200 < th dose independent rect. 15 17
550 363.55 radiation 40 43200 < th dose independent rect. 15 2
554 363.58 radiation 40 43200 < th dose independent rect. 15 12
636 364.58 radiation 1 43200 < th dose dependent rect. 9 1
705 365.98 radiation 1 14400 < th dose independent rect. 8 5
706 365.99 radiation 40 43200 < th dose independent rect. 23 9
714 366.20 radiation 40 43200 < th dose independent rect. 6 2
739 366.95 temperature 15 43200 < th dose independent rect. 4 8
750 367.15 temperature 15 43200 < th dose independent rect. 4 10
758 367.41 radiation 1 14400 > th dose independent rect. 8 5
795 368.31 radiation 10 43200 < th dose dependent rect. 23 6
808 368.62 radiation 1 43200 > th dose dependent rect. 18 13
817 368.88 radiation 20 43200 < th dose dependent rect. 18 13
827 369.11 radiation 1 43200 > th dose dependent rect. 18 11
838 369.26 radiation 1 43200 < th dose independent rect. 23 6
863 369.86 radiation 1 43200 > th dose independent rect. 4 1
875 369.86 radiation 1 43200 > th dose dependent rect. 4 1
911 370.42 radiation 1 43200 > th dose dependent rect. 17 15
917 370.52 radiation 30 43200 > th dose independent rect. 7 1
937 370.57 radiation 10 43200 < th dose dependent rect. 4 3
945 370.69 radiation 40 43200 < th dose dependent rect. 17 15
949 370.75 radiation 10 43200 < th dose dependent rect. 4 1
958 370.78 radiation 40 43200 < th dose dependent rect. 21 10
985 370.98 radiation 30 43200 < th dose dependent rect. 3 4