Os12g0502800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ureide permease 1 (AtUPS1).
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Os12g0502800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ureide permease 1 (AtUPS1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 86.31 | 0.437 | 11.5 | -0.233 | 2.13 | 0.373 | -0.513 | 1.15 | -0.0493 | 5.89 | 24.8 | 242 | -- | -- |
| 90.61 | 0.443 | 11.5 | 0.0206 | 2.18 | 0.336 | -0.14 | -- | -0.00733 | 5.94 | 24.6 | 211 | -- | -- |
| 86.74 | 0.434 | 11.5 | -0.172 | 2.13 | 0.374 | -- | 0.963 | -0.0302 | 5.9 | 24.7 | 219 | -- | -- |
| 89.78 | 0.441 | 11.5 | 0.112 | 2.12 | 0.429 | -- | -- | 0.0767 | 5.92 | 24.7 | 221 | -- | -- |
| 233.61 | 0.712 | 11.5 | -0.093 | -- | 1.42 | -- | 0.718 | 0.295 | -- | 25.89 | 320 | -- | -- |
| 99.84 | 0.468 | 11.5 | -0.0229 | 2.37 | -- | 0.156 | -- | -0.145 | 5.77 | -- | -- | -- | -- |
| 99.9 | 0.468 | 11.5 | -0.022 | 2.37 | -- | -- | -- | -0.146 | 5.77 | -- | -- | -- | -- |
| 229.78 | 0.706 | 11.5 | 0.446 | -- | 1.52 | -- | -- | 0.392 | -- | 25.87 | 335 | -- | -- |
| 90.1 | 0.442 | 11.5 | -- | 2.13 | 0.415 | -- | -- | 0.0595 | 5.91 | 24.69 | 219 | -- | -- |
| 391.17 | 0.924 | 11.6 | 0.0517 | -- | -- | -- | -- | -0.0899 | -- | -- | -- | -- | -- |
| 99.92 | 0.468 | 11.5 | -- | 2.37 | -- | -- | -- | -0.143 | 5.77 | -- | -- | -- | -- |
| 234.91 | 0.714 | 11.5 | -- | -- | 1.48 | -- | -- | 0.33 | -- | 25.89 | 335 | -- | -- |
| 391.24 | 0.923 | 11.6 | -- | -- | -- | -- | -- | -0.0957 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 79.62 | temperature | 10 | 90 | > th | dose dependent | rect. | 6 | 21 |
| 5 | 80.73 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 14 |
| 21 | 82.03 | temperature | 20 | 90 | > th | dose independent | rect. | 6 | 21 |
| 22 | 82.06 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 25 | 82.40 | wind | 9 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 31 | 82.65 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 3 |
| 42 | 82.91 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 45 | 83.02 | wind | 3 | 14400 | > th | dose independent | rect. | 1 | 13 |
| 48 | 83.09 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 13 |
| 49 | 83.12 | wind | 3 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 54 | 83.17 | wind | 1 | 43200 | < th | dose dependent | rect. | 9 | 4 |
| 60 | 83.25 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 7 |
| 61 | 83.26 | wind | 9 | 14400 | < th | dose independent | rect. | 5 | 9 |
| 66 | 83.30 | wind | 3 | 14400 | > th | dose independent | rect. | 24 | 15 |
| 69 | 83.31 | wind | 3 | 14400 | < th | dose independent | rect. | 24 | 15 |
| 77 | 83.40 | wind | 3 | 43200 | < th | dose dependent | rect. | 23 | 4 |
| 79 | 83.43 | wind | 9 | 14400 | < th | dose independent | rect. | 8 | 6 |
| 91 | 83.54 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 2 |
| 108 | 83.65 | temperature | 25 | 270 | > th | dose independent | rect. | 20 | 14 |
| 121 | 83.75 | temperature | 20 | 10 | > th | dose independent | rect. | 6 | 22 |
| 123 | 83.76 | temperature | 25 | 270 | < th | dose independent | sin | 8 | NA |
| 126 | 83.78 | temperature | 10 | 90 | > th | dose dependent | sin | 7 | NA |
| 127 | 83.78 | temperature | 25 | 270 | > th | dose dependent | sin | 7 | NA |
| 147 | 84.02 | wind | 7 | 14400 | > th | dose dependent | rect. | 10 | 4 |
| 149 | 84.03 | wind | 9 | 14400 | < th | dose independent | rect. | 12 | 2 |
| 157 | 84.06 | wind | 1 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 159 | 84.07 | wind | 5 | 14400 | < th | dose dependent | rect. | 1 | 14 |
| 164 | 84.09 | wind | 3 | 14400 | < th | dose independent | sin | 4 | NA |
| 166 | 84.10 | wind | 3 | 14400 | > th | dose independent | sin | 4 | NA |
| 173 | 84.12 | wind | 3 | 43200 | < th | dose independent | rect. | 23 | 4 |
| 180 | 84.14 | wind | 1 | 43200 | < th | dose independent | rect. | 9 | 4 |
| 184 | 84.16 | wind | 3 | 43200 | > th | dose independent | rect. | 23 | 4 |
| 197 | 84.22 | wind | 3 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 201 | 84.22 | wind | 1 | 14400 | > th | dose dependent | rect. | 1 | 14 |
| 210 | 84.26 | wind | 5 | 14400 | < th | dose dependent | rect. | 3 | 11 |
| 219 | 84.28 | wind | 1 | 14400 | > th | dose dependent | rect. | 23 | 17 |
| 223 | 84.32 | wind | 9 | 14400 | < th | dose independent | rect. | 20 | 18 |
| 229 | 84.35 | wind | 9 | 14400 | < th | dose dependent | rect. | 1 | 14 |
| 249 | 84.42 | wind | 9 | 14400 | < th | dose independent | sin | 2 | NA |
| 266 | 84.46 | wind | 9 | 14400 | < th | dose dependent | rect. | 3 | 11 |
| 270 | 84.47 | wind | 1 | 43200 | > th | dose independent | rect. | 9 | 4 |
| 279 | 84.48 | humidity | 90 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 296 | 84.53 | wind | 3 | 14400 | < th | dose independent | rect. | 19 | 19 |
| 301 | 84.54 | wind | 9 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 325 | 84.60 | wind | 9 | 14400 | > th | dose independent | rect. | 20 | 18 |
| 351 | 84.66 | wind | 1 | 14400 | > th | dose dependent | sin | 4 | NA |
| 356 | 84.69 | wind | 3 | 14400 | > th | dose independent | rect. | 19 | 19 |
| 366 | 84.72 | wind | 5 | 14400 | < th | dose dependent | sin | 4 | NA |
| 371 | 84.73 | temperature | 30 | 90 | < th | dose independent | rect. | 3 | 14 |
| 390 | 84.78 | wind | 9 | 14400 | < th | dose dependent | sin | 4 | NA |
| 401 | 84.80 | wind | 1 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 447 | 84.92 | humidity | 90 | 14400 | < th | dose dependent | rect. | 2 | 5 |
| 459 | 84.95 | temperature | 15 | 10 | > th | dose dependent | rect. | 22 | 14 |
| 461 | 84.96 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 5 |
| 485 | 85.01 | wind | 3 | 14400 | < th | dose independent | rect. | 17 | 14 |
| 558 | 85.13 | wind | 9 | 14400 | > th | dose independent | rect. | 9 | 5 |
| 563 | 85.13 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 3 | 14 |
| 583 | 85.17 | temperature | 30 | 90 | < th | dose dependent | sin | 7 | NA |
| 606 | 85.21 | wind | 3 | 14400 | > th | dose independent | rect. | 1 | 5 |
| 609 | 85.21 | wind | 3 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 645 | 85.26 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 7 |
| 673 | 85.30 | temperature | 20 | 10 | > th | dose independent | rect. | 22 | 14 |
| 687 | 85.32 | temperature | 25 | 270 | > th | dose independent | sin | 8 | NA |
| 762 | 85.45 | wind | 3 | 14400 | < th | dose independent | sin | 11 | NA |
| 786 | 85.47 | temperature | 20 | 30 | > th | dose dependent | rect. | 22 | 16 |
| 798 | 85.50 | humidity | 80 | 14400 | > th | dose independent | rect. | 3 | 4 |
| 822 | 85.52 | wind | 9 | 14400 | > th | dose dependent | rect. | 20 | 18 |
| 840 | 85.56 | wind | 9 | 14400 | > th | dose independent | sin | 1 | NA |
| 876 | 85.61 | humidity | 80 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 901 | 85.64 | humidity | 80 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 934 | 85.69 | wind | 3 | 14400 | < th | dose independent | rect. | 4 | 2 |