BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0502800 Os12g0502800|AK073792
(410 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0502800 Similar to Ureide permease 1 (AtUPS1) 775 0.0
Os12g0503000 Similar to Allantoin permease 531 e-151
Os12g0503300 Similar to Ureide permease 2 (AtUPS2) 480 e-136
>Os12g0502800 Similar to Ureide permease 1 (AtUPS1)
Length = 410
Score = 775 bits (2001), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/410 (94%), Positives = 386/410 (94%)
Query: 1 MYIIEDKGGAIALMLASLFFLGTWPAVLTLLERRGRLPQHTYLDYSITNLLAAVLIALTF 60
MYIIEDKGGAIALMLASLFFLGTWPAVLTLLERRGRLPQHTYLDYSITNLLAAVLIALTF
Sbjct: 1 MYIIEDKGGAIALMLASLFFLGTWPAVLTLLERRGRLPQHTYLDYSITNLLAAVLIALTF 60
Query: 61 GQLGDSKPNMPNFFTQLSQDNWPSVLFAMAGGVVLSIGNLSTQYAWAYVGLSVTEVISSS 120
GQLGDSKPNMPNFFTQLSQDNWPSVLFAMAGGVVLSIGNLSTQYAWAYVGLSVTEVISSS
Sbjct: 61 GQLGDSKPNMPNFFTQLSQDNWPSVLFAMAGGVVLSIGNLSTQYAWAYVGLSVTEVISSS 120
Query: 121 MVVVIGTTLNYFLDNRINRAEILFPGVACFLVAVILGSAVHASNAADNEEKLNGSTNIYK 180
MVVVIGTTLNYFLDNRINRAEILFPGVACFLVAVILGSAVHASNAADNEEKLNGSTNIYK
Sbjct: 121 MVVVIGTTLNYFLDNRINRAEILFPGVACFLVAVILGSAVHASNAADNEEKLNGSTNIYK 180
Query: 181 LGENGSVEPNKEVIEKDAPKDLENGASATKYVAKAEAGTAEYLIELEERRSIKVFGSSTF 240
LGENGSVEPNKEVIEKDAPKDLENGASATKYVAKAEAGTAEYLIELEERRSIKVFGSSTF
Sbjct: 181 LGENGSVEPNKEVIEKDAPKDLENGASATKYVAKAEAGTAEYLIELEERRSIKVFGSSTF 240
Query: 241 IGLGIVFFSGVCFSLFSPAFNLATNDQWHTLKQGVPHLVVYTAFFYFSISCFVIGIGLNI 300
IGLGIVFFSGVCFSLFSPAFNLATNDQWHTLKQGVPHLVVYTAFFYFSISCFVIGIGLNI
Sbjct: 241 IGLGIVFFSGVCFSLFSPAFNLATNDQWHTLKQGVPHLVVYTAFFYFSISCFVIGIGLNI 300
Query: 301 LFLYRPMAGVPKSSFKAYLNDWEGRQWALLAGFLCXXXXXXXXXXXXXXXXXXXXXXXXL 360
LFLYRPMAGVPKSSFKAYLNDWEGRQWALLAGFLC L
Sbjct: 301 LFLYRPMAGVPKSSFKAYLNDWEGRQWALLAGFLCGFGNGFQFMGGQAAGYAAADAVQAL 360
Query: 361 PLVSTFWGILLFGEYRKSSRKTYILLGFMLFMFIVAVAVLMASSGHRSTK 410
PLVSTFWGILLFGEYRKSSRKTYILLGFMLFMFIVAVAVLMASSGHRSTK
Sbjct: 361 PLVSTFWGILLFGEYRKSSRKTYILLGFMLFMFIVAVAVLMASSGHRSTK 410
>Os12g0503000 Similar to Allantoin permease
Length = 418
Score = 531 bits (1368), Expect = e-151, Method: Compositional matrix adjust.
Identities = 263/416 (63%), Positives = 313/416 (75%), Gaps = 10/416 (2%)
Query: 1 MYIIEDKGGAIALMLASLFFLGTWPAVLTLLERRGRLPQHTYLDYSITNLLAAVLIALTF 60
MY+++D GGAIALM SL LGTWP VL +LERRGRLPQHTYLDYSITN LAA+L+A TF
Sbjct: 1 MYLVKDIGGAIALMGVSLVLLGTWPVVLAVLERRGRLPQHTYLDYSITNFLAALLVAFTF 60
Query: 61 GQLGDSKPNMPNFFTQLSQ--DNWPSVLFAMAGGVVLSIGNLSTQYAWAYVGLSVTEVIS 118
GQ+G P PNF TQL+Q DNWPS+LFAM+GG+ +G L+TQY WA+VGLSVTEV++
Sbjct: 61 GQIGADTPETPNFLTQLTQMQDNWPSILFAMSGGIFNGLGTLATQYGWAFVGLSVTEVMA 120
Query: 119 SSMVVVIGTTLNYFLDNRINRAEILFPGVACFLVAVILGSAVHASNAADNEEKLNGSTNI 178
SS+ VVIGTTLNYFLD RIN+AEILFPGV CFL+A LGS VH+SNAADN+EKL+ S +
Sbjct: 121 SSLKVVIGTTLNYFLDGRINKAEILFPGVGCFLIAACLGSLVHSSNAADNQEKLS-SAMV 179
Query: 179 YKLGENGSVEPN---KEVIEKDAPKDLENG----ASATKYVAKAEAGTAEYLIELEERRS 231
NG E K ++E + PKD E A A + V K EAGTA++L++LE +RS
Sbjct: 180 NHSNTNGDTENEELTKHLLEIEQPKDCEEQEPEVAPAAQAVEKLEAGTADFLVDLEGKRS 239
Query: 232 IKVFGSSTFIGLGIVFFSGVCFSLFSPAFNLATNDQWHTLKQGVPHLVVYTAFFYFSISC 291
IKV GS+TF+GLGIV F+GV +SLFSPAFNLATNDQWHTL +GVPH+VVYTAFFYFS++C
Sbjct: 240 IKVLGSNTFLGLGIVTFAGVSYSLFSPAFNLATNDQWHTLGEGVPHMVVYTAFFYFSLAC 299
Query: 292 FVIGIGLNILFLYRPMAGVPKSSFKAYLNDWEGRQWALLAGFLCXXXXXXXXXXXXXXXX 351
F IGI LNI FLY PM GVP+SS AYL DW+GR AL+AG +C
Sbjct: 300 FAIGIALNIWFLYHPMVGVPRSSLTAYLKDWKGRDLALVAGMVCGLGNAFQFMAGQAAGY 359
Query: 352 XXXXXXXXLPLVSTFWGILLFGEYRKSSRKTYILLGFMLFMFIVAVAVLMASSGHR 407
LPLVST WGI+LFGEYR+SSR+TY LLG MLFMF+VA+ +LMASS HR
Sbjct: 360 AAADAVQALPLVSTVWGIVLFGEYRRSSRRTYTLLGSMLFMFVVAMVILMASSAHR 415
>Os12g0503300 Similar to Ureide permease 2 (AtUPS2)
Length = 1007
Score = 480 bits (1235), Expect = e-136, Method: Compositional matrix adjust.
Identities = 225/339 (66%), Positives = 274/339 (80%), Gaps = 17/339 (5%)
Query: 1 MYIIEDKGGAIALMLASLFFLGTWPAVLTLLERRGRLPQHTYLDYSITNLLAAVLIALTF 60
M+++ED+GGA+ALM+ASL FLGTWPA+LTLLERRGRLPQHTYLDYS+TNLLAA +IA+TF
Sbjct: 606 MFVVEDRGGAVALMVASLLFLGTWPALLTLLERRGRLPQHTYLDYSVTNLLAAAVIAITF 665
Query: 61 GQLGDSKPNMPNFFTQLSQDNWPSVLFAMAGGVVLSIGNLSTQYAWAYVGLSVTEVISSS 120
GQ+G+++P+MP+FFTQL+QDNWPSVLFAMAGG+ LSIG+L +QYAWA+VGLSVT +I SS
Sbjct: 666 GQVGETRPSMPSFFTQLTQDNWPSVLFAMAGGIALSIGHLISQYAWAFVGLSVTNIICSS 725
Query: 121 MVVVIGTTLNYFLDNRINRAEILFPGVACFLVAVILGSAVHASNAADNEEKLNGSTNIY- 179
+ VV+GTT+NYFLD RINRAEILFPGVACFLVA+ LGSAVH+SNA D EEKL+ S I
Sbjct: 726 LAVVLGTTMNYFLDGRINRAEILFPGVACFLVAIFLGSAVHSSNAKDEEEKLSMSRGIEL 785
Query: 180 --KLGENG-SVEPNKEVIEKDAPKDLENGASATKYVAKAEAGTAEYLIELEERRSIKVFG 236
+ + G + PN+E +E D + GTAE+++++E+RRSIKVFG
Sbjct: 786 SSDVADQGVKLLPNQEELENGEDDDF-------------DTGTAEFIVQVEKRRSIKVFG 832
Query: 237 SSTFIGLGIVFFSGVCFSLFSPAFNLATNDQWHTLKQGVPHLVVYTAFFYFSISCFVIGI 296
SS ++GLG+V +GVCFSLFSPA NLATNDQW TL+ VPHL VYTAFFYFS+SCF +GI
Sbjct: 833 SSRWLGLGMVLLAGVCFSLFSPAINLATNDQWRTLRDSVPHLTVYTAFFYFSVSCFAVGI 892
Query: 297 GLNILFLYRPMAGVPKSSFKAYLNDWEGRQWALLAGFLC 335
GLN LYRP+AGVP S+ AY DW GR WALLAG LC
Sbjct: 893 GLNARLLYRPVAGVPPSTIGAYAGDWNGRHWALLAGLLC 931
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.139 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,889,740
Number of extensions: 451507
Number of successful extensions: 1458
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1452
Number of HSP's successfully gapped: 3
Length of query: 410
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 307
Effective length of database: 11,657,759
Effective search space: 3578932013
Effective search space used: 3578932013
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 157 (65.1 bits)