BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0502500 Os12g0502500|AK069786
(323 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0502500 Nitrilase/cyanide hydratase and apolipoprotein... 579 e-166
Os03g0175600 Similar to Nit protein 2 (CUA002) 136 2e-32
AK107586 133 2e-31
Os06g0206000 Nitrilase/cyanide hydratase and apolipoprotein... 126 2e-29
Os02g0533900 Similar to Carbon-nitrogen hydrolase family pr... 83 3e-16
>Os12g0502500 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
domain containing protein
Length = 323
Score = 579 bits (1493), Expect = e-166, Method: Compositional matrix adjust.
Identities = 281/297 (94%), Positives = 281/297 (94%)
Query: 27 CRGMXXXXXXXXXXXXXXXXRVGVVQMTSVGDLDANYATCSRLAKEAASSGVKFLCFPEV 86
CRGM RVGVVQMTSVGDLDANYATCSRLAKEAASSGVKFLCFPEV
Sbjct: 27 CRGMASSSSPSAAAGASAAARVGVVQMTSVGDLDANYATCSRLAKEAASSGVKFLCFPEV 86
Query: 87 FSFIGSKDGESIKIAEPLDGPIMQRYCSLAKESSMWLSLGGFQEKGPDDSHQYNTHVLID 146
FSFIGSKDGESIKIAEPLDGPIMQRYCSLAKESSMWLSLGGFQEKGPDDSHQYNTHVLID
Sbjct: 87 FSFIGSKDGESIKIAEPLDGPIMQRYCSLAKESSMWLSLGGFQEKGPDDSHQYNTHVLID 146
Query: 147 DSGEIRSSYRKIHLFDVDVPGNMVYKESRFTTAGDTVVAVDSPFGRLGLTVCYDLRFPEL 206
DSGEIRSSYRKIHLFDVDVPGNMVYKESRFTTAGDTVVAVDSPFGRLGLTVCYDLRFPEL
Sbjct: 147 DSGEIRSSYRKIHLFDVDVPGNMVYKESRFTTAGDTVVAVDSPFGRLGLTVCYDLRFPEL 206
Query: 207 YQCLRFKHQAQVLLVPSAFTKVTGEAHWEILLRARAIETQCYVIAAAQAGKHNEKRESYG 266
YQCLRFKHQAQVLLVPSAFTKVTGEAHWEILLRARAIETQCYVIAAAQAGKHNEKRESYG
Sbjct: 207 YQCLRFKHQAQVLLVPSAFTKVTGEAHWEILLRARAIETQCYVIAAAQAGKHNEKRESYG 266
Query: 267 DSIIIDPWGTVIARLPDRLSTGFAVADVDLSKVEAVRTKMPISEHRKFDSVWKTSSL 323
DSIIIDPWGTVIARLPDRLSTGFAVADVDLSKVEAVRTKMPISEHRKFDSVWKTSSL
Sbjct: 267 DSIIIDPWGTVIARLPDRLSTGFAVADVDLSKVEAVRTKMPISEHRKFDSVWKTSSL 323
>Os03g0175600 Similar to Nit protein 2 (CUA002)
Length = 310
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 140/274 (51%), Gaps = 11/274 (4%)
Query: 47 RVGVVQMTSVGDLDANYATCSRLAKEAASSGVKFLCFPEVFSFIGSKDGESIKIAEPLDG 106
+V + Q++ D N A + AA+ G K + PE+++ S D + AE ++
Sbjct: 29 KVALCQLSVTADKARNIARAREAIEAAAAGGAKLVLLPEIWNGPYSNDSFP-EYAEDIEA 87
Query: 107 -----PIMQRYCSLAKESSMWLSLGGFQEKGPDDSHQYNTHVLIDDSGEIRSSYRKIHLF 161
P +A+ + L G E+ + YNT + GE++ +RKIHLF
Sbjct: 88 GGDAAPSFSMMSEVARSLQITLVGGSISER--SGNKLYNTCCVFGSDGELKGKHRKIHLF 145
Query: 162 DVDVPGNMVYKESRFTTAGDTVVAVDSPFGRLGLTVCYDLRFPELYQCLRFKHQAQVLLV 221
D+D+PG + +KES+ TAG + VD+ GR+G+ +CYD+RF EL L A +L
Sbjct: 146 DIDIPGKITFKESKTLTAGQDLTVVDTDVGRIGIGICYDIRFQEL-AMLYAARGAHLLCY 204
Query: 222 PSAFTKVTGEAHWEILLRARAIETQCYVIAAAQAGKHNEKRESYGDSIIIDPWGTVIARL 281
P AF TG HWE+L RARA + Q +V A A + ++G S ++ P+G VIA
Sbjct: 205 PGAFNMTTGPLHWELLQRARAADNQLFVATCAPARDTSAGYIAWGHSTLVGPFGEVIATA 264
Query: 282 PDRLSTGFAVADVDLSKVEAVRTKMPISEHRKFD 315
+T +A++D S ++ R +P+ R+ D
Sbjct: 265 EHEETT--IMAEIDYSLIDQRRQFLPLQYQRRGD 296
>AK107586
Length = 372
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 115/226 (50%), Gaps = 20/226 (8%)
Query: 107 PIMQRYCSLAKESSMWLSLGGFQEKGPDDSHQYNTHVLIDDSGEIRSSYRKIHLFDVDVP 166
P ++ A+E+ + L G E+ + YN+ + ++ G++ S +RK+HLFD+D+P
Sbjct: 142 PSLKMLSETAREAKVVLVGGSVPERDDLTGNIYNSSCVFNEEGQLISIHRKLHLFDIDIP 201
Query: 167 GNMVYKESRFTTAGDTVVAVDSPFGRLGLTVCYDLRFPELYQCLRFKHQAQVLLVPSAFT 226
G M ++ES GD V D GR GL +CYDLRFPE + + A ++ P AF
Sbjct: 202 GKMTFQESETLAGGDRVTLFDCSLGRFGLGICYDLRFPE-PAMIAGRLGAGCMIYPGAFN 260
Query: 227 KVTGEAHWEILLRARAIETQCYVIAAAQA--------GKHNEKR---------ESYGDSI 269
TG WE+LLRARA + Q Y + + A G+ +K ++G S
Sbjct: 261 TTTGPVSWELLLRARATDNQVYTLGCSPARPSQQAMDGESTDKDGWRQGEKAYPAWGHST 320
Query: 270 IIDPWGTVIARLPDRLSTGFAVADVDLSKVEAVRTKMPISEHRKFD 315
++ P G V A+L + T F +D +V R +PIS R+FD
Sbjct: 321 VVGPLGDVKAKLAEEEDTLFFT--LDPEEVAQTRRNIPISTQRRFD 364
>Os06g0206000 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
domain containing protein
Length = 287
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 109/179 (60%), Gaps = 5/179 (2%)
Query: 139 YNTHVLIDDSGEIRSSYRKIHLFDVDVPGNMVYKESRFTTAGDTVVAVDSPFGRLGLTVC 198
+NT +I G+I++ +RK+HLF++D+PG++ ++ES TAG VD+ GR+G+ +C
Sbjct: 74 FNTCCVIGPDGQIKAKHRKLHLFEIDIPGDITFRESDTFTAGQEPTIVDTDVGRIGIGIC 133
Query: 199 YDLRFPELYQCLRFKHQAQVLLVPSAFTKVTGEAHWEILLRARAIETQCYVIAAAQAGKH 258
+D+RFPEL R + A ++ PSAF TG+ W+++ ++RA++ Q +V+ + A
Sbjct: 134 HDIRFPELAMLYRSR-GAHLICYPSAFNMSTGQLLWDLMQKSRAVDNQLFVVTCSPARDP 192
Query: 259 NEKRES--YGDSIIIDPWGTVIARLPDRLSTGFAVADVDLSKVEAVRTKMPISEHRKFD 315
N + + +G S +I P+G VIA +T V ++D S ++ +R +P+ R+ D
Sbjct: 193 NAESDYMIWGHSSLIGPFGEVIATAGHEEAT--VVGEIDHSMIQTIRDNLPLEMQRRED 249
>Os02g0533900 Similar to Carbon-nitrogen hydrolase family protein
Length = 301
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 128/286 (44%), Gaps = 28/286 (9%)
Query: 48 VGVVQMTSVGDLDANYATCSRLAKEAASSGVKFLCFPEVFS---FIGSKDGESIKIAEPL 104
V VQ N T RL +EA G + E+F F ++ + + A+P
Sbjct: 13 VAAVQFACTDVESENVDTAERLIREAHKKGANIVLVQELFEGQYFCQAQRLDFFQRAKPY 72
Query: 105 DG-PIMQRYCSLAKESSMWLSLGGFQEKGPDDSHQYNTHVLIDDSGEIRSSYRKIHLFDV 163
G P + R+ LAKE + + + F+E ++ YN+ +ID G YRK H+
Sbjct: 73 KGNPTIIRFQKLAKELEVVIPVSFFEEA---NNAHYNSVAIIDADGTDLGLYRKSHI--P 127
Query: 164 DVPGNMVYKESRFTTAGDT-VVAVDSPFGRLGLTVCYDLRFPELYQCLRFKHQAQVLLVP 222
D PG Y+E + GDT A + + +G+ +C+D FPE + + + A++L P
Sbjct: 128 DGPG---YQEKFYFNPGDTGFKAFKTKYATIGVGICWDQWFPECARAMVLQ-GAEILFYP 183
Query: 223 SAF------TKVTGEAHWEILLRARAIETQCYVIAAAQAGKHNEKRES-------YGDSI 269
+A + HW+ +++ A ++A+ + G+ + E +G+S
Sbjct: 184 TAIGSEPQDNNLDSREHWKRVMQGHAGANLVPLVASNRIGRETVETEHGESTITFFGNSF 243
Query: 270 IIDPWGTVIARLPDRLSTGFAVADVDLSKVEAVRTKMPISEHRKFD 315
I P G ++ +L + VA+ DL ++++ R I R+ D
Sbjct: 244 IAGPTGEIV-KLANDKDEDVLVAEFDLDEIKSTRHGWGIFRDRRPD 288
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.135 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,362,344
Number of extensions: 377354
Number of successful extensions: 685
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 678
Number of HSP's successfully gapped: 5
Length of query: 323
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 222
Effective length of database: 11,762,187
Effective search space: 2611205514
Effective search space used: 2611205514
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)