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Os03g0175600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Nit protein 2 (CUA002).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.4 (0.0206) R2 : 0.308
β1 : -0.88 (0.0756) R2dD : 0.213 R2D : 0.0934
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.453 (0.0441) R2dN8 : 0.215 R2N8 : 0.0945
σ : 0.387
deviance : 68.7
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_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
37.7 0.288 11.4 -1.11 0.815 1.32 -0.379 0.417 -0.636 1.57 9.821 11 -- --
37.81 0.286 11.4 -1.17 0.811 1.33 -0.456 -- -0.654 1.55 9.727 17 -- --
38.08 0.287 11.4 -1.04 0.823 1.34 -- 0.877 -0.62 1.65 7.041 17 -- --
38.72 0.29 11.4 -1.16 0.818 1.35 -- -- -0.654 1.64 7.447 17 -- --
47.91 0.322 11.4 -1.27 -- 1.13 -- -0.336 -0.657 -- -15.97 972 -- --
54.31 0.345 11.4 -0.921 0.447 -- -0.659 -- -0.465 0.877 -- -- -- --
56.13 0.351 11.4 -0.897 0.449 -- -- -- -0.461 0.957 -- -- -- --
48.01 0.323 11.4 -1.2 -- 1.12 -- -- -0.639 -- 4.174 973 -- --
70.06 0.392 11.4 -- 0.667 0.684 -- -- -0.46 1.39 19.6 7 -- --
68.7 0.387 11.4 -0.88 -- -- -- -- -0.453 -- -- -- -- --
77.33 0.411 11.3 -- 0.435 -- -- -- -0.361 0.868 -- -- -- --
80.79 0.419 11.4 -- -- 0.513 -- -- -0.439 -- 21.23 972 -- --
89.13 0.441 11.3 -- -- -- -- -- -0.355 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 36.39 temperature 15 10 > th dose dependent rect. 23 23
5 37.42 temperature 30 30 < th dose dependent rect. 3 23
10 37.63 temperature 30 10 < th dose dependent rect. 1 23
12 37.71 temperature 10 10 > th dose dependent no NA NA
16 37.82 temperature 30 90 < th dose dependent rect. 20 23
17 37.89 temperature 15 270 > th dose dependent rect. 16 23
18 38.02 temperature 30 10 < th dose dependent rect. 9 23
23 38.11 temperature 30 10 < th dose dependent rect. 13 23
24 38.13 temperature 30 30 < th dose dependent rect. 11 23
25 38.15 temperature 30 10 < th dose dependent no NA NA
27 38.17 temperature 30 270 < th dose dependent rect. 8 23
31 38.23 temperature 30 10 < th dose dependent rect. 21 23
32 38.24 temperature 30 30 < th dose dependent rect. 15 23
35 38.33 temperature 30 270 < th dose dependent rect. 17 22
36 38.34 temperature 10 720 > th dose dependent rect. 13 22
51 38.53 temperature 30 10 < th dose dependent rect. 17 23
59 38.63 temperature 15 270 > th dose dependent rect. 4 23
76 38.79 temperature 30 270 < th dose dependent rect. 24 23
110 39.07 temperature 15 270 > th dose dependent rect. 19 23
133 39.25 temperature 30 10 < th dose dependent rect. 7 23
145 39.39 temperature 10 720 > th dose dependent rect. 19 16
162 39.48 temperature 20 10 > th dose dependent rect. 13 23
164 39.49 temperature 20 10 > th dose dependent rect. 6 23
170 39.56 temperature 20 10 > th dose dependent rect. 2 23
176 39.58 temperature 15 720 > th dose dependent rect. 19 21
180 39.60 temperature 30 30 < th dose dependent rect. 5 23
205 39.71 temperature 15 270 > th dose dependent sin 8 NA
210 39.73 temperature 25 1440 > th dose independent rect. 23 16
211 39.73 temperature 25 270 < th dose independent rect. 19 20
213 39.74 temperature 25 4320 > th dose independent rect. 23 1
222 39.76 temperature 25 4320 < th dose independent rect. 19 8
226 39.77 temperature 25 4320 < th dose independent rect. 23 2
234 39.79 temperature 25 4320 > th dose independent rect. 19 7
238 39.81 temperature 30 270 < th dose dependent sin 8 NA
249 39.84 temperature 20 30 > th dose dependent rect. 17 23
254 39.86 temperature 20 10 > th dose dependent rect. 4 23
277 39.92 temperature 20 10 > th dose dependent rect. 21 23
298 39.99 temperature 25 1440 < th dose independent rect. 23 16
311 40.02 temperature 25 1440 > th dose independent rect. 23 22
320 40.04 temperature 25 1440 > th dose independent rect. 8 21
331 40.05 temperature 20 10 > th dose dependent rect. 15 23
333 40.06 temperature 25 1440 > th dose independent rect. 11 18
353 40.10 temperature 30 720 < th dose dependent rect. 17 17
370 40.12 temperature 25 1440 > th dose independent rect. 18 21
379 40.13 temperature 25 1440 < th dose independent rect. 23 22
457 40.25 temperature 25 1440 < th dose independent rect. 8 21
491 40.30 temperature 25 1440 < th dose independent rect. 19 20
555 40.36 temperature 30 10 < th dose dependent rect. 23 23
608 40.41 temperature 30 720 < th dose dependent sin 11 NA
618 40.42 temperature 25 1440 > th dose independent rect. 11 23
643 40.44 temperature 25 720 > th dose independent rect. 19 16
649 40.44 temperature 20 1440 > th dose dependent rect. 23 2
654 40.45 temperature 25 1440 > th dose independent no NA NA
682 40.47 temperature 25 720 > th dose independent rect. 17 18
738 40.51 temperature 25 1440 > th dose independent rect. 13 23
824 40.59 temperature 25 4320 < th dose independent sin 13 NA
838 40.60 temperature 25 1440 < th dose independent no NA NA
842 40.60 temperature 25 720 > th dose independent rect. 15 20
843 40.60 temperature 25 1440 < th dose independent rect. 11 23
872 40.62 temperature 25 720 < th dose dependent rect. 3 21
879 40.63 temperature 25 1440 < th dose independent rect. 13 23
956 40.68 temperature 20 90 > th dose dependent rect. 9 23
959 40.69 temperature 25 4320 > th dose independent sin 13 NA