BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0502000 Os12g0502000|AK060063
         (101 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0502000  Conserved hypothetical protein                      161   9e-41
Os11g0629400  Similar to Nitrilase associated protein-like        102   9e-23
Os03g0417800  Conserved hypothetical protein                       90   5e-19

>Os12g0502000 Conserved hypothetical protein
          Length = 101

 Score =  161 bits (408), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 80/80 (100%), Positives = 80/80 (100%)

Query: 22  EAPKSAEKPAPVQKPAPSSSAEKLKEIPAGIQSSKANNYMRAEGQNCGNFLTDRPSTKVQ 81
           EAPKSAEKPAPVQKPAPSSSAEKLKEIPAGIQSSKANNYMRAEGQNCGNFLTDRPSTKVQ
Sbjct: 22  EAPKSAEKPAPVQKPAPSSSAEKLKEIPAGIQSSKANNYMRAEGQNCGNFLTDRPSTKVQ 81

Query: 82  AAPGGGSSLDYLFSGNKDGK 101
           AAPGGGSSLDYLFSGNKDGK
Sbjct: 82  AAPGGGSSLDYLFSGNKDGK 101



>Os11g0629400 Similar to Nitrilase associated protein-like
          Length = 115

 Score =  102 bits (253), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 46/54 (85%), Positives = 50/54 (92%)

Query: 43  EKLKEIPAGIQSSKANNYMRAEGQNCGNFLTDRPSTKVQAAPGGGSSLDYLFSG 96
           EK+KEIPAGIQS++ANNY RA+GQNCGNFLTDRPSTKV AAPGGGSSL YLF G
Sbjct: 61  EKMKEIPAGIQSTQANNYFRAQGQNCGNFLTDRPSTKVHAAPGGGSSLGYLFGG 114



>Os03g0417800 Conserved hypothetical protein
          Length = 148

 Score = 89.7 bits (221), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 43/57 (75%), Positives = 48/57 (84%), Gaps = 1/57 (1%)

Query: 42  AEKLKEIPAGIQSSKANN-YMRAEGQNCGNFLTDRPSTKVQAAPGGGSSLDYLFSGN 97
           A+  K+IPAGIQ S++NN Y RA+GQN GNFLTDRPSTKV AAPGGGSSL YLF GN
Sbjct: 92  ADATKQIPAGIQGSRSNNNYHRADGQNTGNFLTDRPSTKVHAAPGGGSSLGYLFGGN 148



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.303    0.123    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,295,184
Number of extensions: 126909
Number of successful extensions: 521
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 518
Number of HSP's successfully gapped: 3
Length of query: 101
Length of database: 17,035,801
Length adjustment: 69
Effective length of query: 32
Effective length of database: 13,433,035
Effective search space: 429857120
Effective search space used: 429857120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 149 (62.0 bits)