Os03g0417800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0417800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.64 | 0.256 | 12.6 | -0.397 | 0.349 | -0.384 | 0.462 | -0.417 | 0.221 | 4.9 | 20.4 | 970 | -- | -- |
| 30.08 | 0.255 | 12.6 | -0.325 | 0.35 | -0.327 | 0.445 | -- | 0.236 | 5.03 | 20.59 | 972 | -- | -- |
| 30.18 | 0.256 | 12.6 | -0.391 | 0.351 | -0.39 | -- | -0.386 | 0.222 | 4.82 | 20.45 | 950 | -- | -- |
| 30.56 | 0.257 | 12.6 | -0.32 | 0.354 | -0.341 | -- | -- | 0.238 | 4.89 | 20.51 | 968 | -- | -- |
| 36.11 | 0.28 | 12.6 | -0.414 | -- | -0.377 | -- | -0.472 | 0.219 | -- | 20.41 | 628 | -- | -- |
| 32.99 | 0.269 | 12.6 | -0.456 | 0.346 | -- | 0.538 | -- | 0.163 | 5.46 | -- | -- | -- | -- |
| 33.7 | 0.272 | 12.6 | -0.455 | 0.349 | -- | -- | -- | 0.161 | 5.38 | -- | -- | -- | -- |
| 36.68 | 0.282 | 12.6 | -0.326 | -- | -0.321 | -- | -- | 0.245 | -- | 20.71 | 627 | -- | -- |
| 33 | 0.268 | 12.6 | -- | 0.374 | -0.399 | -- | -- | 0.291 | 4.7 | 20.5 | 1059 | -- | -- |
| 40.06 | 0.296 | 12.6 | -0.443 | -- | -- | -- | -- | 0.169 | -- | -- | -- | -- | -- |
| 39.15 | 0.293 | 12.6 | -- | 0.342 | -- | -- | -- | 0.211 | 5.43 | -- | -- | -- | -- |
| 39.21 | 0.292 | 12.6 | -- | -- | -0.408 | -- | -- | 0.298 | -- | 20.8 | 637 | -- | -- |
| 45.24 | 0.314 | 12.6 | -- | -- | -- | -- | -- | 0.219 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.69 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 7 | 8 |
| 2 | 28.73 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 9 | 8 |
| 4 | 28.77 | temperature | 30.0 | 90 | < th | dose dependent | sin | 1 | NA |
| 8 | 28.89 | temperature | 20.0 | 90 | > th | dose dependent | sin | 1 | NA |
| 21 | 29.00 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 14 |
| 22 | 29.01 | temperature | 20.0 | 10 | > th | dose dependent | sin | 0 | NA |
| 34 | 29.04 | temperature | 25.0 | 270 | > th | dose independent | rect. | 24 | 15 |
| 39 | 29.06 | temperature | 25.0 | 90 | > th | dose independent | rect. | 9 | 8 |
| 53 | 29.11 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 14 |
| 72 | 29.17 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 4 | 15 |
| 78 | 29.19 | temperature | 25.0 | 270 | > th | dose independent | rect. | 7 | 8 |
| 96 | 29.24 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 23 | 15 |
| 104 | 29.26 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 23 | 18 |
| 116 | 29.29 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 4 | 12 |
| 128 | 29.31 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 4 | 19 |
| 151 | 29.37 | temperature | 25.0 | 270 | < th | dose independent | sin | 4 | NA |
| 164 | 29.41 | temperature | 25.0 | 270 | > th | dose independent | sin | 4 | NA |
| 186 | 29.44 | temperature | 25.0 | 270 | > th | dose independent | rect. | 4 | 11 |
| 233 | 29.49 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 1 | 16 |
| 272 | 29.53 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 6 | 13 |
| 334 | 29.59 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 9 | 18 |
| 341 | 29.60 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 6 | 17 |
| 376 | 29.63 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 20 | 21 |
| 392 | 29.66 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 400 | 29.67 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 4 | 10 |
| 452 | 29.72 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 9 | 13 |
| 503 | 29.76 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 544 | 29.79 | temperature | 25.0 | 30 | < th | dose independent | rect. | 4 | 14 |
| 557 | 29.80 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 20 | 5 |
| 576 | 29.81 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 9 | 17 |
| 589 | 29.82 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 595 | 29.83 | temperature | 25.0 | 30 | < th | dose independent | rect. | 4 | 12 |
| 599 | 29.83 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 9 | 2 |
| 668 | 29.88 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 6 | 6 |
| 753 | 29.93 | temperature | 25.0 | 270 | > th | dose independent | rect. | 9 | 2 |
| 755 | 29.93 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 20 | 5 |
| 760 | 29.93 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 17 | 3 |
| 899 | 30.01 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 19 |
| 945 | 30.04 | temperature | 20.0 | 720 | > th | dose independent | rect. | 19 | 16 |
| 946 | 30.04 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 15 | 3 |
| 985 | 30.06 | temperature | 20.0 | 720 | > th | dose independent | rect. | 14 | 21 |