BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0417800 Os03g0417800|AK121654
         (148 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0417800  Conserved hypothetical protein                       97   4e-21
Os12g0502000  Conserved hypothetical protein                       66   1e-11
Os11g0629400  Similar to Nitrilase associated protein-like         65   1e-11

>Os03g0417800 Conserved hypothetical protein
          Length = 148

 Score = 97.1 bits (240), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 56/110 (50%), Positives = 56/110 (50%)

Query: 26  FTSSTIKMXXXXXXXXXXXXXXYLFGGNEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 85
           FTSSTIKM              YLFGGNE                               
Sbjct: 26  FTSSTIKMSRGGSAGGGQSSLGYLFGGNEAPKPAAKPAPAAAPAPAPAPAPAAAVAAPAE 85

Query: 86  XXXXXXXXXTKQIPAGIQGSRSNNNYHRADGQNTGNFLTDRPSTKVHAAP 135
                    TKQIPAGIQGSRSNNNYHRADGQNTGNFLTDRPSTKVHAAP
Sbjct: 86  KPSPAKADATKQIPAGIQGSRSNNNYHRADGQNTGNFLTDRPSTKVHAAP 135



>Os12g0502000 Conserved hypothetical protein
          Length = 101

 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/40 (77%), Positives = 35/40 (87%), Gaps = 1/40 (2%)

Query: 96  KQIPAGIQGSRSNNNYHRADGQNTGNFLTDRPSTKVHAAP 135
           K+IPAGIQ S++NN Y RA+GQN GNFLTDRPSTKV AAP
Sbjct: 46  KEIPAGIQSSKANN-YMRAEGQNCGNFLTDRPSTKVQAAP 84



>Os11g0629400 Similar to Nitrilase associated protein-like
          Length = 115

 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/40 (77%), Positives = 35/40 (87%), Gaps = 1/40 (2%)

Query: 96  KQIPAGIQGSRSNNNYHRADGQNTGNFLTDRPSTKVHAAP 135
           K+IPAGIQ +++NN Y RA GQN GNFLTDRPSTKVHAAP
Sbjct: 64  KEIPAGIQSTQANN-YFRAQGQNCGNFLTDRPSTKVHAAP 102



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.128    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,990,901
Number of extensions: 42785
Number of successful extensions: 54
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 3
Length of query: 148
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 56
Effective length of database: 12,232,113
Effective search space: 684998328
Effective search space used: 684998328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 151 (62.8 bits)