Os12g0502000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0502000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.01 | 0.282 | 10.3 | -0.858 | 0.272 | 0.379 | 0.447 | 0.398 | -0.193 | 11.9 | 24.8 | 266 | -- | -- |
| 36.59 | 0.282 | 10.2 | -0.753 | 0.267 | 0.357 | 0.422 | -- | -0.182 | 11.5 | 24.8 | 262 | -- | -- |
| 36.8 | 0.283 | 10.2 | -0.819 | 0.263 | 0.377 | -- | 0.325 | -0.183 | 11.6 | 24.52 | 264 | -- | -- |
| 37.12 | 0.284 | 10.2 | -0.718 | 0.273 | 0.391 | -- | -- | -0.146 | 11.7 | 24.51 | 244 | -- | -- |
| 39.64 | 0.293 | 10.3 | -0.893 | -- | 0.408 | -- | 0.53 | -0.222 | -- | 24.7 | 512 | -- | -- |
| 44.62 | 0.313 | 10.3 | -0.862 | 0.309 | -- | 0.506 | -- | -0.349 | 8.71 | -- | -- | -- | -- |
| 45.47 | 0.316 | 10.3 | -0.845 | 0.308 | -- | -- | -- | -0.349 | 8.67 | -- | -- | -- | -- |
| 40.3 | 0.296 | 10.2 | -0.708 | -- | 0.437 | -- | -- | -0.165 | -- | 24.7 | 504 | -- | -- |
| 50.11 | 0.33 | 10.2 | -- | 0.264 | 0.484 | -- | -- | -0.0263 | 12.3 | 24.5 | 264 | -- | -- |
| 50.84 | 0.333 | 10.3 | -0.845 | -- | -- | -- | -- | -0.347 | -- | -- | -- | -- | -- |
| 64.3 | 0.375 | 10.3 | -- | 0.306 | -- | -- | -- | -0.255 | 8.88 | -- | -- | -- | -- |
| 52.92 | 0.339 | 10.2 | -- | -- | 0.525 | -- | -- | -0.0465 | -- | 24.8 | 550 | -- | -- |
| 69.65 | 0.39 | 10.3 | -- | -- | -- | -- | -- | -0.253 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.03 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 18 |
| 2 | 33.03 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 20 |
| 4 | 33.20 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 10 | 33.42 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 20 |
| 41 | 34.69 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 43 | 34.72 | temperature | 25 | 270 | > th | dose independent | rect. | 20 | 18 |
| 47 | 34.81 | temperature | 25 | 270 | > th | dose independent | rect. | 17 | 21 |
| 60 | 34.97 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 62 | 34.99 | temperature | 25 | 270 | > th | dose independent | rect. | 22 | 15 |
| 65 | 35.01 | temperature | 25 | 270 | < th | dose independent | rect. | 21 | 21 |
| 136 | 35.68 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 138 | 35.69 | temperature | 20 | 270 | > th | dose dependent | sin | 6 | NA |
| 156 | 35.78 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 163 | 35.82 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 6 |
| 176 | 35.89 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 21 |
| 205 | 36.02 | temperature | 25 | 270 | < th | dose independent | sin | 6 | NA |
| 209 | 36.02 | temperature | 20 | 90 | > th | dose dependent | sin | 4 | NA |
| 220 | 36.05 | temperature | 15 | 270 | > th | dose dependent | rect. | 7 | 18 |
| 269 | 36.23 | temperature | 10 | 270 | > th | dose dependent | sin | 6 | NA |
| 275 | 36.24 | temperature | 25 | 270 | > th | dose independent | sin | 6 | NA |
| 301 | 36.31 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 22 |
| 334 | 36.38 | temperature | 25 | 270 | < th | dose independent | no | NA | NA |
| 351 | 36.42 | temperature | 20 | 10 | > th | dose dependent | sin | 2 | NA |
| 360 | 36.44 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 16 |
| 373 | 36.46 | temperature | 25 | 30 | > th | dose independent | rect. | 9 | 7 |
| 398 | 36.51 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 23 |
| 410 | 36.53 | temperature | 25 | 270 | < th | dose independent | rect. | 13 | 23 |
| 411 | 36.53 | temperature | 30 | 270 | < th | dose dependent | sin | 6 | NA |
| 414 | 36.54 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 9 |
| 429 | 36.57 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 5 |
| 441 | 36.59 | temperature | 25 | 270 | < th | dose independent | rect. | 11 | 23 |
| 454 | 36.61 | temperature | 10 | 10 | > th | dose dependent | sin | 1 | NA |
| 477 | 36.64 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 543 | 36.78 | temperature | 25 | 270 | > th | dose independent | rect. | 4 | 23 |
| 553 | 36.79 | temperature | 30 | 90 | < th | dose dependent | sin | 2 | NA |
| 595 | 36.86 | temperature | 25 | 270 | > th | dose independent | no | NA | NA |
| 612 | 36.88 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 23 |
| 613 | 36.88 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 13 |
| 641 | 36.91 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 681 | 36.99 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 685 | 36.99 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 707 | 37.03 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 23 |
| 749 | 37.09 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 766 | 37.13 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 797 | 37.15 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 812 | 37.16 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 838 | 37.19 | temperature | 30 | 10 | < th | dose dependent | sin | 0 | NA |
| 840 | 37.19 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 17 |
| 868 | 37.22 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 882 | 37.24 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 935 | 37.31 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 954 | 37.35 | temperature | 25 | 720 | < th | dose dependent | sin | 23 | NA |
| 955 | 37.35 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |