BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0502000 Os12g0502000|AK060063
(101 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G69230.1 | chr1:26026543-26027085 REVERSE LENGTH=111 98 1e-21
AT1G26355.1 | chr1:9117950-9118611 REVERSE LENGTH=114 93 3e-20
AT2G03680.1 | chr2:1121398-1121850 FORWARD LENGTH=120 88 1e-18
AT3G02180.1 | chr3:404989-405457 FORWARD LENGTH=123 82 5e-17
AT5G15600.1 | chr5:5078405-5078863 FORWARD LENGTH=128 75 7e-15
AT4G23496.1 | chr4:12257914-12258297 REVERSE LENGTH=100 65 7e-12
>AT1G69230.1 | chr1:26026543-26027085 REVERSE LENGTH=111
Length = 110
Score = 97.8 bits (242), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 56/69 (81%)
Query: 31 APVQKPAPSSSAEKLKEIPAGIQSSKANNYMRAEGQNCGNFLTDRPSTKVQAAPGGGSSL 90
AP + A +++ + +K++PAG+ S+ ANNYMRAEGQN GNF+TDRPSTKV +APGGGSSL
Sbjct: 42 APPTQAAAANAVDSIKQVPAGLNSNSANNYMRAEGQNTGNFITDRPSTKVHSAPGGGSSL 101
Query: 91 DYLFSGNKD 99
DYLF G +
Sbjct: 102 DYLFGGGSN 110
>AT1G26355.1 | chr1:9117950-9118611 REVERSE LENGTH=114
Length = 113
Score = 92.8 bits (229), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/90 (55%), Positives = 55/90 (61%), Gaps = 19/90 (21%)
Query: 26 SAEKPAPVQKPAPSSSAEKL-------------------KEIPAGIQSSKANNYMRAEGQ 66
S E P P AP+ S+E L K+IPAGI S NNY+RA+GQ
Sbjct: 20 SGEAPKPAINNAPAPSSETLPISADPSPKHVAAQTVNVTKQIPAGINKSSTNNYIRADGQ 79
Query: 67 NCGNFLTDRPSTKVQAAPGGGSSLDYLFSG 96
N GNFLTDRPSTKV AAPGGGSSLDYLF G
Sbjct: 80 NTGNFLTDRPSTKVHAAPGGGSSLDYLFGG 109
>AT2G03680.1 | chr2:1121398-1121850 FORWARD LENGTH=120
Length = 119
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/57 (77%), Positives = 48/57 (84%), Gaps = 1/57 (1%)
Query: 42 AEKLKEIPAGIQSSKANNYMRAEGQNCGNFLTDRPSTKVQAAPGGGSSLDYLFSGNK 98
AE K+IPAGI++ NNY RAEGQN GNFLTDRPSTKV AAPGGGSSLDYLF+G K
Sbjct: 64 AELNKQIPAGIKT-PVNNYARAEGQNTGNFLTDRPSTKVHAAPGGGSSLDYLFTGGK 119
>AT3G02180.1 | chr3:404989-405457 FORWARD LENGTH=123
Length = 122
Score = 82.0 bits (201), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 39/51 (76%), Positives = 43/51 (84%), Gaps = 1/51 (1%)
Query: 46 KEIPAGIQSSKANNYMRAEGQNCGNFLTDRPSTKVQAAPGGGSSLDYLFSG 96
K+ AG++ S NNY R+EGQNCGNFLTDRPSTKV AAPGGGSSLDYLF G
Sbjct: 64 KKTSAGVRGS-PNNYFRSEGQNCGNFLTDRPSTKVHAAPGGGSSLDYLFGG 113
>AT5G15600.1 | chr5:5078405-5078863 FORWARD LENGTH=128
Length = 127
Score = 75.1 bits (183), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 36/51 (70%), Positives = 42/51 (82%), Gaps = 1/51 (1%)
Query: 44 KLKEIPAGIQSSKANNYMRAEGQNCGNFLTDRPSTKVQAAPGGGSSLDYLF 94
K +E AG++ S NNY R++GQNCGNFLT+RPSTKV AAPGGGSSL YLF
Sbjct: 69 KTEENSAGVRGS-PNNYYRSDGQNCGNFLTERPSTKVHAAPGGGSSLGYLF 118
>AT4G23496.1 | chr4:12257914-12258297 REVERSE LENGTH=100
Length = 99
Score = 65.1 bits (157), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 27/37 (72%), Positives = 32/37 (86%)
Query: 58 NNYMRAEGQNCGNFLTDRPSTKVQAAPGGGSSLDYLF 94
NNY R +GQN GNF+TDRP+TKV++ PGGGSSL YLF
Sbjct: 60 NNYQRVQGQNSGNFVTDRPTTKVKSVPGGGSSLGYLF 96
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.303 0.123 0.345
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,924,231
Number of extensions: 70254
Number of successful extensions: 263
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 263
Number of HSP's successfully gapped: 6
Length of query: 101
Length of database: 11,106,569
Length adjustment: 71
Effective length of query: 30
Effective length of database: 9,160,033
Effective search space: 274800990
Effective search space used: 274800990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 104 (44.7 bits)