BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0501400 Os12g0501400|AK111281
(225 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0501400 UspA domain containing protein 389 e-109
Os03g0598400 117 8e-27
Os01g0875300 UspA domain containing protein 80 1e-15
Os05g0428400 UspA domain containing protein 77 8e-15
>Os12g0501400 UspA domain containing protein
Length = 225
Score = 389 bits (1000), Expect = e-109, Method: Compositional matrix adjust.
Identities = 196/225 (87%), Positives = 196/225 (87%)
Query: 1 MAARSSLPSFCLHQIRSDSRRGAPPSIRASSTGAANDGGRNDDVDGKEEEEKSEVGRKVM 60
MAARSSLPSFCLHQIRSDSRRGAPPSIRASSTGAANDGGRNDDVDGKEEEEKSEVGRKVM
Sbjct: 1 MAARSSLPSFCLHQIRSDSRRGAPPSIRASSTGAANDGGRNDDVDGKEEEEKSEVGRKVM 60
Query: 61 VVADGGSDEARTALQWALSHSVRPCDTXXXXXXXXXXXXXXXXXXXXPSRGCQHLETMRS 120
VVADGGSDEARTALQWALSHSVRPCDT PSRGCQHLETMRS
Sbjct: 61 VVADGGSDEARTALQWALSHSVRPCDTVVLLDVVKSGGDGGGKNGDDPSRGCQHLETMRS 120
Query: 121 ICQAKRPEVRVELSLVEGKERGPAIVEAARKQGVSLLVMGQKKRSITWRLLVMWMTXXXX 180
ICQAKRPEVRVELSLVEGKERGPAIVEAARKQGVSLLVMGQKKRSITWRLLVMWMT
Sbjct: 121 ICQAKRPEVRVELSLVEGKERGPAIVEAARKQGVSLLVMGQKKRSITWRLLVMWMTGGKG 180
Query: 181 XXXXXTAEYCVQNAACMALAVRRKSRRGGGYLITTRRQRDFWLLA 225
TAEYCVQNAACMALAVRRKSRRGGGYLITTRRQRDFWLLA
Sbjct: 181 GGGRGTAEYCVQNAACMALAVRRKSRRGGGYLITTRRQRDFWLLA 225
>Os03g0598400
Length = 292
Score = 117 bits (292), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 105/197 (53%), Gaps = 31/197 (15%)
Query: 57 RKVMVVADGGSDEARTALQWALSHSVRPCDTXXXXXXXXXXXXXXXXXXXXP-------- 108
R+VMVVADG + EA ALQWALS +VR D
Sbjct: 99 RRVMVVADGRA-EAAGALQWALSQAVRRNDAVLLLAVVRPAANASSDGGGGGGESSCVNI 157
Query: 109 --SRGCQHLETMRSICQAKRPEVRVELSLVE--GKERGPAIVEAARKQGVSLLVMGQ--- 161
+R Q L+ MRS+C++ RPEV+V++ ++E G+ER PA+VEAAR+ G SLLV+GQ
Sbjct: 158 SRTRCYQQLDAMRSMCESARPEVKVKVCVMEAAGRERAPAVVEAARRHGASLLVLGQRRR 217
Query: 162 -KKRSITWRLLVMWMTXXXXXX------------XXXTAEYCVQNAACMALAVRRKSRRG 208
+ W L +W T EYC+++A C+AL VRR+S
Sbjct: 218 RRAAVARWLQLALWPAVAAAAAKSKYWRRRGARRSTTTVEYCIEHAPCVALGVRRRS--S 275
Query: 209 GGYLITTRRQRDFWLLA 225
GGYL++++R +DFWLLA
Sbjct: 276 GGYLVSSKRHKDFWLLA 292
>Os01g0875300 UspA domain containing protein
Length = 241
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 83/169 (49%), Gaps = 13/169 (7%)
Query: 57 RKVMVVADGGSDEARTALQWALSHSVRPCDTXXXXXXXXXXXXXXXXXXXXPSRGCQHLE 116
++VMVV D S A+ A+ WAL+H D PS
Sbjct: 86 KRVMVVVDDTSG-AKHAMMWALTHVANKGD--FLTLLHVLPYAGAGRGEETPSLA----N 138
Query: 117 TMRSICQAKRPEVRVELSLVEGKERGPAIVEAARKQGVSLLVMGQKKRSITWRLLVMWMT 176
++ ++C+A RPEV VE +++G + ++ +K S+LV+ Q K S W++
Sbjct: 139 SLGTLCKACRPEVEVEALVIQGPKLA-TVLSQVKKLEASVLVLSQSKPS-----HFCWLS 192
Query: 177 XXXXXXXXXTAEYCVQNAACMALAVRRKSRRGGGYLITTRRQRDFWLLA 225
E C+ A C+ LAVR++S+ GGYLI+TR Q++FWLLA
Sbjct: 193 CILRSSSEEFVEQCINQAECLTLAVRKQSKGVGGYLISTRWQKNFWLLA 241
>Os05g0428400 UspA domain containing protein
Length = 225
Score = 77.4 bits (189), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 83/176 (47%), Gaps = 21/176 (11%)
Query: 51 EKSEVGRK-VMVVADGGSDEARTALQWALSHSVRPCDTXXXXXXXXXXXXXXXXXXXXPS 109
E++ GRK VMVV D S A+ A+ WAL+H D
Sbjct: 70 EEAPAGRKRVMVVVDQSSG-AKHAMMWALTHVASKGDFLTLLHVLPHGGGDASALA---- 124
Query: 110 RGCQHLETMRSICQAKRPEVRVELSLVEGKERGPAIVEAARKQGVSLLVMGQKKRSITWR 169
++ S+C+A +PEV VE +++G + G ++ +K S+LV+ Q K S
Sbjct: 125 ------NSLGSLCKACKPEVEVEALVIQGPKLG-TVLSQVKKLDASVLVLSQCKPSP--- 174
Query: 170 LLVMWMTXXXXXXXXXTAEYCVQNAACMALAVRRKSRRGGGYLITTRRQRDFWLLA 225
E C+ A C+ LAVRR+S+ GGYLI+TR Q++FWLLA
Sbjct: 175 -----FCCFMRSSGEEFVEECINRADCLTLAVRRQSKGVGGYLISTRWQKNFWLLA 225
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.130 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,326,269
Number of extensions: 273656
Number of successful extensions: 1749
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1743
Number of HSP's successfully gapped: 4
Length of query: 225
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 128
Effective length of database: 11,971,043
Effective search space: 1532293504
Effective search space used: 1532293504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)