Os01g0875300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : UspA domain containing protein.
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Os01g0875300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : UspA domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 312.29 | 0.83 | 4.83 | -2.02 | 1.09 | 1.75 | 1.52 | -1.24 | -0.798 | 6.85 | 24.9 | 1322 | -- | -- |
| 312.86 | 0.824 | 4.79 | -1.7 | 1.09 | 1.64 | 1.48 | -- | -0.707 | 6.91 | 24.99 | 1307 | -- | -- |
| 317.86 | 0.83 | 4.82 | -1.95 | 1.11 | 1.75 | -- | -1.08 | -0.757 | 7.06 | 25.15 | 1306 | -- | -- |
| 318.41 | 0.831 | 4.8 | -1.67 | 1.09 | 1.67 | -- | -- | -0.716 | 7.13 | 24.94 | 1305 | -- | -- |
| 380.07 | 0.908 | 4.86 | -1.92 | -- | 1.79 | -- | -0.885 | -0.796 | -- | 24.58 | 1338 | -- | -- |
| 412.45 | 0.952 | 4.75 | -1.14 | 1.16 | -- | 1.97 | -- | -0.508 | 6.08 | -- | -- | -- | -- |
| 421.61 | 0.962 | 4.75 | -1.12 | 1.17 | -- | -- | -- | -0.514 | 6.31 | -- | -- | -- | -- |
| 380.35 | 0.908 | 4.83 | -1.67 | -- | 1.71 | -- | -- | -0.736 | -- | 24.52 | 1340 | -- | -- |
| 385.92 | 0.915 | 4.74 | -- | 1.12 | 1.31 | -- | -- | -0.441 | 7.2 | 25.47 | 1287 | -- | -- |
| 492.68 | 1.04 | 4.77 | -1.09 | -- | -- | -- | -- | -0.489 | -- | -- | -- | -- | -- |
| 454.85 | 0.998 | 4.72 | -- | 1.15 | -- | -- | -- | -0.389 | 6.37 | -- | -- | -- | -- |
| 448.19 | 0.986 | 4.76 | -- | -- | 1.31 | -- | -- | -0.459 | -- | 25.3 | 1323 | -- | -- |
| 524.12 | 1.07 | 4.74 | -- | -- | -- | -- | -- | -0.368 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 308.59 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 14 |
| 2 | 311.56 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 4 | 311.69 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 17 |
| 8 | 311.77 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 12 |
| 9 | 311.79 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 59 | 313.00 | temperature | 25 | 1440 | > th | dose dependent | sin | 16 | NA |
| 103 | 313.92 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 7 |
| 163 | 315.65 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 168 | 315.69 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 169 | 315.69 | temperature | 25 | 1440 | > th | dose dependent | rect. | 2 | 23 |
| 216 | 315.96 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 322 | 317.79 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 359 | 318.93 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 2 |
| 367 | 319.20 | temperature | 25 | 720 | > th | dose dependent | rect. | 21 | 2 |
| 394 | 320.10 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 10 |
| 399 | 320.28 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 10 |
| 403 | 320.38 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 6 |
| 417 | 320.76 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 18 |
| 421 | 320.79 | wind | 5 | 43200 | > th | dose independent | rect. | 4 | 12 |
| 423 | 320.83 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 16 |
| 426 | 320.85 | wind | 5 | 43200 | < th | dose independent | rect. | 24 | 16 |
| 427 | 320.88 | wind | 5 | 43200 | < th | dose independent | rect. | 3 | 13 |
| 428 | 320.89 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 14 |
| 431 | 320.90 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 12 |
| 434 | 320.91 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 6 |
| 436 | 320.94 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 9 |
| 439 | 320.96 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 7 |
| 458 | 321.35 | wind | 5 | 43200 | > th | dose independent | rect. | 24 | 16 |
| 461 | 321.37 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 3 |
| 463 | 321.42 | wind | 5 | 43200 | < th | dose independent | rect. | 19 | 21 |
| 484 | 321.59 | temperature | 30 | 1440 | < th | dose independent | sin | 15 | NA |
| 536 | 322.01 | wind | 5 | 43200 | > th | dose independent | rect. | 19 | 21 |
| 542 | 322.07 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 10 |
| 566 | 322.26 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 597 | 322.43 | wind | 5 | 43200 | < th | dose independent | sin | 3 | NA |
| 623 | 322.68 | temperature | 30 | 1440 | > th | dose independent | sin | 15 | NA |
| 626 | 322.73 | wind | 5 | 43200 | > th | dose independent | sin | 3 | NA |
| 633 | 322.78 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 639 | 322.83 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 692 | 323.21 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 711 | 323.44 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 729 | 323.58 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 779 | 323.80 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 808 | 324.09 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 823 | 324.25 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 825 | 324.29 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 835 | 324.37 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 853 | 324.46 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 9 |
| 864 | 324.49 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 6 |
| 871 | 324.51 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 16 |
| 877 | 324.59 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 895 | 324.73 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 906 | 324.82 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 963 | 325.13 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 21 |