BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0875300 Os01g0875300|Os01g0875300
(241 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G44760.1 | chr1:16896894-16898427 REVERSE LENGTH=214 211 3e-55
AT1G69080.1 | chr1:25972132-25973243 REVERSE LENGTH=224 107 6e-24
AT2G03720.1 | chr2:1132364-1133225 FORWARD LENGTH=166 97 1e-20
AT3G03290.1 | chr3:766745-767742 FORWARD LENGTH=275 91 5e-19
AT5G17390.1 | chr5:5727640-5728688 FORWARD LENGTH=286 89 2e-18
AT4G13450.1 | chr4:7815146-7815904 REVERSE LENGTH=220 52 2e-07
>AT1G44760.1 | chr1:16896894-16898427 REVERSE LENGTH=214
Length = 213
Score = 211 bits (537), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 109/155 (70%), Positives = 126/155 (81%), Gaps = 7/155 (4%)
Query: 88 VMVVVDDTSGAKHAMMWALTHVANKGDFLTLLHVLPYAGAGRGEETPSLANSLGTLCKAC 147
VMVVVD++S +KHAMMWALTH+ NKGD +TLLHV+ + E TPSLA SLG+LCKAC
Sbjct: 65 VMVVVDESSRSKHAMMWALTHLTNKGDLVTLLHVV----SPDDEATPSLAQSLGSLCKAC 120
Query: 148 RPEVEVEALVIQGPKLATVLSQVKKLEASVLVLSQSKPSHFCWLSCIL-RSSSEEFVEQC 206
+PEV+VEALVIQGPKLATVLSQVKKLE SVLVL Q K + +SC+ S SEE V +C
Sbjct: 121 KPEVDVEALVIQGPKLATVLSQVKKLEVSVLVLGQKKSAPL--ISCLCGPSRSEELVNRC 178
Query: 207 INQAECLTLAVRKQSKGVGGYLISTRWQKNFWLLA 241
IN A+CLT+ VRKQ KGVGGYLI+TRWQKNFWLLA
Sbjct: 179 INGADCLTIGVRKQCKGVGGYLINTRWQKNFWLLA 213
>AT1G69080.1 | chr1:25972132-25973243 REVERSE LENGTH=224
Length = 223
Score = 107 bits (267), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 102/179 (56%), Gaps = 26/179 (14%)
Query: 88 VMVVVDDTSGAKHAMMWALTHVANKGDFLTLLHVL--------PYAGAGRGEE------T 133
++VVVD S AK+A++W L+H A D + LLH L A GE+ T
Sbjct: 46 IIVVVDSCSEAKNALLWTLSHCAQPQDSILLLHFLKAKTSQSGDLANKEEGEDESCDKPT 105
Query: 134 PSLAN----SLGTLCKACRPEVEVEALVIQGP-KLATVLSQVKKLEASVLVLSQSKPSHF 188
S A+ +L T+C+ RPEV+ E + ++G K T++ + ++ EAS+LVL Q K H
Sbjct: 106 TSRADKKVSALKTMCELKRPEVKTEVVFVKGDEKGPTIVKEAREREASLLVLGQKK-QHA 164
Query: 189 CWLSCILRSS------SEEFVEQCINQAECLTLAVRKQSKGVGGYLISTRWQKNFWLLA 241
W ++ +S +FVE CIN + C+ +AVRK+ K +GGY ++T+ K+FWLLA
Sbjct: 165 TWRLLMVWASQARPVTKHDFVEYCINNSPCMAIAVRKRGKKLGGYTLTTKRHKDFWLLA 223
>AT2G03720.1 | chr2:1132364-1133225 FORWARD LENGTH=166
Length = 165
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 87/166 (52%), Gaps = 14/166 (8%)
Query: 89 MVVVDDTSGAKHAMMWALTHVANKGDFLTLLHV--LPYAGA------GRGEETPSLANSL 140
MVVVD TS K+A+ WALTH D +TLLHV P A R L + L
Sbjct: 1 MVVVDTTSQTKNALQWALTHCVQDEDNITLLHVTRTPVGQAIDETQRERNSRAHELVHPL 60
Query: 141 GTLCKACRPEVEVEALVIQG--PKLATVLSQVKKLEASVLVLSQSKPS---HFCWLSCIL 195
C+ +P V+ E +V++ K T++ + KK A VLVL Q K + W
Sbjct: 61 KNFCQLKKPNVKTEIVVVETAEEKGKTIVEESKKQGAGVLVLGQRKRTSKWRVIWKWRTK 120
Query: 196 RSSSEEFVEQCINQAECLTLAVRKQSKGVGGYLISTRWQKNFWLLA 241
VE CI+ ++C+ +AVRK+S GGYLI+T+ K+FWLLA
Sbjct: 121 GGMGGGVVEYCIHNSDCMAIAVRKKSNN-GGYLITTKRHKDFWLLA 165
>AT3G03290.1 | chr3:766745-767742 FORWARD LENGTH=275
Length = 274
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 91/170 (53%), Gaps = 19/170 (11%)
Query: 88 VMVVVDDTSGAKHAMMWALTHVANKGDFLTLLHV-LPYAGAGRGE-----ETPSLANSLG 141
VMVVVD + A+ WAL H D+L LL+ P+ R +T L ++L
Sbjct: 108 VMVVVDKVIASTGALEWALKHTLQSQDYLFLLYFSKPFRKGKRKNRKSEVKTDELVHTLK 167
Query: 142 TLCKACRPEVEVEALVIQGP---KLATVLSQVKKLEASVLVLSQSKP-------SHFCWL 191
LC+ RP +EVE +QG K ++ + K+ + S+LV+ + K + W
Sbjct: 168 KLCQTKRPGIEVEIRRLQGKEKEKGEKIVEEAKEQQVSLLVVGKEKKPPVWRLLKRWGWK 227
Query: 192 SCILRSSSEEFVEQCINQAECLTLAVRKQSKGVGGYLISTRWQKNFWLLA 241
R+ + ++ C+ +A C+T+AV+ +++ +GGYLI+T+ KNFWLLA
Sbjct: 228 KRRGRAGTLKY---CLEKASCMTIAVKPKNRKLGGYLITTKRHKNFWLLA 274
>AT5G17390.1 | chr5:5727640-5728688 FORWARD LENGTH=286
Length = 285
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 90/170 (52%), Gaps = 19/170 (11%)
Query: 88 VMVVVDDTSGAKHAMMWALTHVANKGDFLTLLHVL-PYAGAGRGE-----ETPSLANSLG 141
VMVVVD + A+ WA+TH D L LL+ P+ + R +T L ++L
Sbjct: 119 VMVVVDKALASTGALEWAITHTLQPQDTLFLLYFAKPFRKSKRKNRKREVKTDELVHTLK 178
Query: 142 TLCKACRPEVEVEALVIQG---PKLATVLSQVKKLEASVLVLSQSKP-------SHFCWL 191
LC+ RP +EVE ++G K ++ + KK + S+LV+ Q K + W
Sbjct: 179 KLCQTKRPGIEVEIRRLEGKDKDKGQKIVEESKKQQVSLLVVGQEKKPPVWRLLKRWAWK 238
Query: 192 SCILRSSSEEFVEQCINQAECLTLAVRKQSKGVGGYLISTRWQKNFWLLA 241
R E ++ C+ A C+T+AV+ +++ +GGYLI+T+ KNFWLLA
Sbjct: 239 R---RRGHEGVLKYCLENASCMTIAVKPKNRKLGGYLITTKRHKNFWLLA 285
>AT4G13450.1 | chr4:7815146-7815904 REVERSE LENGTH=220
Length = 219
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 81/204 (39%), Gaps = 51/204 (25%)
Query: 88 VMVVVDDTSGAKHAMMWALTHVANKGDFLTLLHVLPYAGAGR------------------ 129
+MV+ D T + A+ +AL+H + D L L+H+ G+ +
Sbjct: 17 IMVIADPTRESAAALQYALSHAVLEQDELILVHIENSGGSWKNAFSSFLRLPSSISSSSS 76
Query: 130 ------------------------GEETPSLANSLGTLCKACRPEVEV--EALVIQGPKL 163
G+ + + +C+ +P+V V E + I G K
Sbjct: 77 GSSPASNGTTTASNAAANALASEIGQGDGNFLEQMKRICEIAQPKVRVHTECIAIDGVKA 136
Query: 164 ATVLSQVKKLEASVLVLSQSKPSHFCWLSC-----ILRSSSE-EFVEQCINQAECLTLAV 217
+L KL V+++ Q + L LR S + E I ++C + V
Sbjct: 137 TAILLHGDKLGVDVIIIGQRRTISSSLLGTRRPGGSLRGSKGVDTAEYLIENSKCTCVGV 196
Query: 218 RKQSKGVGGYLISTRWQKNFWLLA 241
K+ + GGY+++T+ KNFWLLA
Sbjct: 197 TKKGQN-GGYVLNTKTHKNFWLLA 219
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.131 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,634,378
Number of extensions: 118307
Number of successful extensions: 320
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 310
Number of HSP's successfully gapped: 6
Length of query: 241
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 145
Effective length of database: 8,474,633
Effective search space: 1228821785
Effective search space used: 1228821785
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)