BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0875300 Os01g0875300|Os01g0875300
(241 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0875300 UspA domain containing protein 330 5e-91
Os05g0428400 UspA domain containing protein 250 8e-67
Os12g0501400 UspA domain containing protein 88 5e-18
Os10g0463300 UspA domain containing protein 70 2e-12
Os03g0598400 68 6e-12
>Os01g0875300 UspA domain containing protein
Length = 241
Score = 330 bits (847), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 171/241 (70%), Positives = 171/241 (70%)
Query: 1 MASGGGEHFLRQLSASNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
MASGGGEHFLRQLSASN
Sbjct: 1 MASGGGEHFLRQLSASNGGYGGAAQYQMGRGVVAEEEVELGGGGRRRGSKRWSKKRAGRG 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXXXXVMVVVDDTSGAKHAMMWALTHVANKGDFLTLLH 120
VMVVVDDTSGAKHAMMWALTHVANKGDFLTLLH
Sbjct: 61 GYGGGGGGKGDAAAAAAAAAAVAGRKRVMVVVDDTSGAKHAMMWALTHVANKGDFLTLLH 120
Query: 121 VLPYAGAGRGEETPSLANSLGTLCKACRPEVEVEALVIQGPKLATVLSQVKKLEASVLVL 180
VLPYAGAGRGEETPSLANSLGTLCKACRPEVEVEALVIQGPKLATVLSQVKKLEASVLVL
Sbjct: 121 VLPYAGAGRGEETPSLANSLGTLCKACRPEVEVEALVIQGPKLATVLSQVKKLEASVLVL 180
Query: 181 SQSKPSHFCWLSCILRSSSEEFVEQCINQAECLTLAVRKQSKGVGGYLISTRWQKNFWLL 240
SQSKPSHFCWLSCILRSSSEEFVEQCINQAECLTLAVRKQSKGVGGYLISTRWQKNFWLL
Sbjct: 181 SQSKPSHFCWLSCILRSSSEEFVEQCINQAECLTLAVRKQSKGVGGYLISTRWQKNFWLL 240
Query: 241 A 241
A
Sbjct: 241 A 241
>Os05g0428400 UspA domain containing protein
Length = 225
Score = 250 bits (638), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 124/154 (80%), Positives = 137/154 (88%), Gaps = 7/154 (4%)
Query: 88 VMVVVDDTSGAKHAMMWALTHVANKGDFLTLLHVLPYAGAGRGEETPSLANSLGTLCKAC 147
VMVVVD +SGAKHAMMWALTHVA+KGDFLTLLHVLP+ G + +LANSLG+LCKAC
Sbjct: 79 VMVVVDQSSGAKHAMMWALTHVASKGDFLTLLHVLPHGGG----DASALANSLGSLCKAC 134
Query: 148 RPEVEVEALVIQGPKLATVLSQVKKLEASVLVLSQSKPSHFCWLSCILRSSSEEFVEQCI 207
+PEVEVEALVIQGPKL TVLSQVKKL+ASVLVLSQ KPS FC C +RSS EEFVE+CI
Sbjct: 135 KPEVEVEALVIQGPKLGTVLSQVKKLDASVLVLSQCKPSPFC---CFMRSSGEEFVEECI 191
Query: 208 NQAECLTLAVRKQSKGVGGYLISTRWQKNFWLLA 241
N+A+CLTLAVR+QSKGVGGYLISTRWQKNFWLLA
Sbjct: 192 NRADCLTLAVRRQSKGVGGYLISTRWQKNFWLLA 225
>Os12g0501400 UspA domain containing protein
Length = 225
Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 90/167 (53%), Gaps = 13/167 (7%)
Query: 88 VMVVVDDTSG-AKHAMMWALTHVANKGDFLTLLHVLP--YAGAGRGEETPSLA----NSL 140
VMVV D S A+ A+ WAL+H D + LL V+ G G+ + PS ++
Sbjct: 59 VMVVADGGSDEARTALQWALSHSVRPCDTVVLLDVVKSGGDGGGKNGDDPSRGCQHLETM 118
Query: 141 GTLCKACRPEVEVEALVIQGPKLA-TVLSQVKKLEASVLVLSQSKPSH-----FCWLSCI 194
++C+A RPEV VE +++G + ++ +K S+LV+ Q K S W++
Sbjct: 119 RSICQAKRPEVRVELSLVEGKERGPAIVEAARKQGVSLLVMGQKKRSITWRLLVMWMTGG 178
Query: 195 LRSSSEEFVEQCINQAECLTLAVRKQSKGVGGYLISTRWQKNFWLLA 241
E C+ A C+ LAVR++S+ GGYLI+TR Q++FWLLA
Sbjct: 179 KGGGGRGTAEYCVQNAACMALAVRRKSRRGGGYLITTRRQRDFWLLA 225
>Os10g0463300 UspA domain containing protein
Length = 206
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 83/186 (44%), Gaps = 33/186 (17%)
Query: 88 VMVVVDDTSGAKHAMMWALTHVANKGDFLTLLHV--LPYAGAGRGEETPSLANSLGT--- 142
VM++ D + AM WAL+H +GD + LLH+ P + G G S G+
Sbjct: 22 VMIIADPGRESTAAMEWALSHAVAEGDAILLLHINMPPNSAGGAGPSRTGSGGSAGSPLT 81
Query: 143 -------------------LCKACRPEVEVEALVIQG------PKLATVLSQVKKLEASV 177
CKA P V AL ++ K T+L++ ++ +
Sbjct: 82 ALLGAGAAGDADFMETMSAACKARHPRARVRALRVEPATEGREAKAQTILAESQRRGVEL 141
Query: 178 LVLSQSKPSHFCWLSCILRSSS--EEFVEQCINQAECLTLAVRKQSKGVGGYLISTRWQK 235
LV+ + S F L SS + E I ++C+ ++V+K+ + GYL++T+ K
Sbjct: 142 LVIGHRRVSSFLGLRSPSGSSRAHDSTAEFLIEHSKCVCVSVQKKGQNA-GYLLNTKTHK 200
Query: 236 NFWLLA 241
NFWLLA
Sbjct: 201 NFWLLA 206
>Os03g0598400
Length = 292
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 86/194 (44%), Gaps = 42/194 (21%)
Query: 88 VMVVVDDTSGAKHAMMWALTHVANKGDFLTLLHVL-PYAGAGRGEETPSLANS------- 139
VMVV D + A A+ WAL+ + D + LL V+ P A A +S
Sbjct: 101 VMVVADGRAEAAGALQWALSQAVRRNDAVLLLAVVRPAANASSDGGGGGGESSCVNISRT 160
Query: 140 --------LGTLCKACRPEVEVEALVIQGP---KLATVLSQVKKLEASVLVLSQSKPSHF 188
+ ++C++ RPEV+V+ V++ + V+ ++ AS+LVL Q +
Sbjct: 161 RCYQQLDAMRSMCESARPEVKVKVCVMEAAGRERAPAVVEAARRHGASLLVLGQRRRRRA 220
Query: 189 C---WLSCIL------------------RSSSEEFVEQCINQAECLTLAVRKQSKGVGGY 227
WL L S VE CI A C+ L VR++S G GY
Sbjct: 221 AVARWLQLALWPAVAAAAAKSKYWRRRGARRSTTTVEYCIEHAPCVALGVRRRSSG--GY 278
Query: 228 LISTRWQKNFWLLA 241
L+S++ K+FWLLA
Sbjct: 279 LVSSKRHKDFWLLA 292
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.131 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,919,301
Number of extensions: 191545
Number of successful extensions: 462
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 460
Number of HSP's successfully gapped: 5
Length of query: 241
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 143
Effective length of database: 11,918,829
Effective search space: 1704392547
Effective search space used: 1704392547
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)