Os12g0501400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : UspA domain containing protein.
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Os12g0501400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : UspA domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 79.43 | 0.419 | 3.03 | 0.2 | 0.0993 | 0.139 | 0.0824 | 0.856 | -0.0223 | 9.18 | 72.59 | 4896 | -- | -- |
| 80.33 | 0.417 | 3.03 | 0.147 | 0.107 | 0.202 | 0.00501 | -- | -0.0528 | 8.98 | 72 | 4904 | -- | -- |
| 79.46 | 0.415 | 3.03 | 0.201 | 0.0994 | 0.14 | -- | 0.841 | -0.0226 | 9.11 | 72.61 | 4895 | -- | -- |
| 80.31 | 0.417 | 3.03 | 0.147 | 0.0987 | 0.228 | -- | -- | -0.0209 | 9.06 | 68.99 | 5490 | -- | -- |
| 79.98 | 0.417 | 3.03 | 0.203 | -- | 0.117 | -- | 0.878 | -0.015 | -- | 72.67 | 4663 | -- | -- |
| 80.95 | 0.422 | 3.03 | 0.133 | 0.0833 | -- | 0.0256 | -- | -0.0107 | 9.57 | -- | -- | -- | -- |
| 80.95 | 0.421 | 3.03 | 0.134 | 0.0834 | -- | -- | -- | -0.0107 | 9.5 | -- | -- | -- | -- |
| 80.77 | 0.419 | 3.03 | 0.144 | -- | 0.196 | -- | -- | -0.0228 | -- | 68 | 5709 | -- | -- |
| 80.81 | 0.419 | 3.03 | -- | 0.103 | 0.222 | -- | -- | -0.0376 | 9.84 | 69 | 5490 | -- | -- |
| 81.36 | 0.421 | 3.03 | 0.134 | -- | -- | -- | -- | -0.0105 | -- | -- | -- | -- | -- |
| 81.43 | 0.422 | 3.03 | -- | 0.0832 | -- | -- | -- | -0.0256 | 9.38 | -- | -- | -- | -- |
| 81.3 | 0.42 | 3.03 | -- | -- | 0.19 | -- | -- | -0.0338 | -- | 69 | 5692 | -- | -- |
| 81.83 | 0.422 | 3.03 | -- | -- | -- | -- | -- | -0.0253 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 73.96 | humidity | 70.0 | 30 | < th | dose independent | rect. | 19 | 1 |
| 13 | 74.06 | humidity | 70.0 | 30 | < th | dose dependent | rect. | 19 | 1 |
| 41 | 75.53 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 13 | 1 |
| 43 | 75.55 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 14 | 1 |
| 51 | 75.61 | temperature | 25.0 | 10 | < th | dose independent | rect. | 13 | 1 |
| 87 | 76.53 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 19 | 4 |
| 108 | 76.87 | humidity | 90.0 | 30 | < th | dose independent | rect. | 22 | 1 |
| 112 | 76.88 | wind | 9.0 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 113 | 76.88 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 116 | 76.88 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 120 | 76.88 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 130 | 76.88 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 131 | 76.88 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 151 | 76.88 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 24 | 23 |
| 154 | 76.88 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 23 | 1 |
| 160 | 76.90 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 22 | 1 |
| 162 | 76.91 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 13 | 1 |
| 166 | 76.91 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 13 | 1 |
| 169 | 76.92 | temperature | 25.0 | 30 | > th | dose independent | rect. | 22 | 1 |
| 171 | 76.92 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 22 | 1 |
| 177 | 76.94 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 22 | 1 |
| 178 | 76.94 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 22 | 1 |
| 180 | 76.95 | wind | 1.0 | 30 | > th | dose independent | rect. | 22 | 1 |
| 182 | 76.95 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 22 | 1 |
| 183 | 76.96 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 22 | 1 |
| 184 | 76.96 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 22 | 1 |
| 186 | 76.97 | wind | 7.0 | 30 | < th | dose independent | rect. | 22 | 1 |
| 188 | 76.97 | temperature | 10.0 | 30 | > th | dose independent | rect. | 22 | 1 |
| 190 | 76.97 | temperature | 30.0 | 30 | < th | dose independent | rect. | 22 | 1 |
| 191 | 76.97 | humidity | 50.0 | 30 | > th | dose independent | rect. | 22 | 1 |
| 194 | 76.97 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 22 | 1 |
| 195 | 76.97 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 22 | 1 |
| 197 | 76.97 | radiation | 1.0 | 30 | < th | dose independent | rect. | 22 | 1 |
| 202 | 76.97 | temperature | 10.0 | 30 | > th | dose independent | rect. | 23 | 23 |
| 203 | 76.97 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 22 | 1 |
| 209 | 76.98 | wind | 9.0 | 30 | < th | dose dependent | rect. | 22 | 1 |
| 215 | 77.00 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 19 | 2 |
| 223 | 77.01 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 19 | 10 |
| 225 | 77.02 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 22 | 1 |
| 227 | 77.03 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 13 | 1 |
| 229 | 77.05 | wind | 1.0 | 30 | > th | dose dependent | rect. | 22 | 1 |
| 234 | 77.07 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 14 | 1 |
| 238 | 77.08 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 22 | 1 |
| 245 | 77.12 | radiation | 10.0 | 10 | < th | dose independent | rect. | 14 | 1 |
| 250 | 77.18 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 253 | 77.18 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 257 | 77.18 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 259 | 77.18 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 263 | 77.18 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 283 | 77.18 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 20 | 23 |
| 286 | 77.18 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 19 | 1 |
| 304 | 77.25 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 22 | 1 |
| 308 | 77.27 | radiation | 10.0 | 30 | < th | dose independent | rect. | 12 | 2 |
| 330 | 77.33 | wind | 9.0 | 30 | < th | dose independent | rect. | 23 | 23 |
| 333 | 77.33 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 12 | 3 |
| 355 | 77.46 | wind | 9.0 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 442 | 77.67 | temperature | 25.0 | 30 | > th | dose independent | rect. | 19 | 4 |
| 569 | 78.25 | wind | 3.0 | 10 | > th | dose independent | rect. | 19 | 1 |
| 580 | 78.27 | humidity | 90.0 | 30 | < th | dose independent | rect. | 19 | 4 |
| 603 | 78.32 | temperature | 25.0 | 30 | > th | dose independent | rect. | 19 | 1 |
| 616 | 78.37 | wind | 3.0 | 10 | > th | dose independent | rect. | 19 | 4 |
| 684 | 78.52 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 19 | 4 |
| 744 | 78.64 | temperature | 30.0 | 270 | > th | dose independent | rect. | 18 | 1 |
| 770 | 78.67 | humidity | 90.0 | 720 | < th | dose independent | rect. | 4 | 1 |
| 834 | 78.77 | humidity | 60.0 | 30 | > th | dose independent | rect. | 13 | 1 |
| 835 | 78.77 | radiation | 30.0 | 10 | < th | dose independent | rect. | 13 | 2 |
| 875 | 78.81 | humidity | 50.0 | 270 | > th | dose independent | rect. | 13 | 12 |
| 878 | 78.82 | humidity | 70.0 | 10 | < th | dose independent | sin | 11 | NA |
| 922 | 78.89 | atmosphere | 1010.0 | 270 | > th | dose independent | rect. | 12 | 1 |
| 931 | 78.89 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 10 | 5 |
| 932 | 78.89 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 13 | 10 |
| 944 | 78.92 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 14 | 5 |
| 948 | 78.93 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 957 | 78.93 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 981 | 78.96 | atmosphere | 1010.0 | 720 | > th | dose dependent | rect. | 2 | 1 |
| 983 | 78.96 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 12 | 11 |
| 986 | 78.97 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 6 | 13 |
| 988 | 78.98 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 19 | 1 |
| 1000 | 78.99 | wind | 7.0 | 720 | < th | dose independent | rect. | 23 | 9 |