BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0501400 Os12g0501400|AK111281
(225 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G69080.1 | chr1:25972132-25973243 REVERSE LENGTH=224 141 2e-34
AT5G17390.1 | chr5:5727640-5728688 FORWARD LENGTH=286 127 6e-30
AT2G03720.1 | chr2:1132364-1133225 FORWARD LENGTH=166 124 5e-29
AT3G03290.1 | chr3:766745-767742 FORWARD LENGTH=275 119 9e-28
AT1G44760.1 | chr1:16896894-16898427 REVERSE LENGTH=214 73 1e-13
AT4G13450.1 | chr4:7815146-7815904 REVERSE LENGTH=220 62 2e-10
>AT1G69080.1 | chr1:25972132-25973243 REVERSE LENGTH=224
Length = 223
Score = 141 bits (356), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 105/182 (57%), Gaps = 13/182 (7%)
Query: 56 GRKVMVVADGGSDEARTALQWALSHSVRPCDTXXXXXXXXXXXXXXXXXXX--------- 106
GR+++VV D S EA+ AL W LSH +P D+
Sbjct: 43 GRRIIVVVDSCS-EAKNALLWTLSHCAQPQDSILLLHFLKAKTSQSGDLANKEEGEDESC 101
Query: 107 ---XPSRGCQHLETMRSICQAKRPEVRVELSLVEGKERGPAIVEAARKQGVSLLVMGQKK 163
SR + + ++++C+ KRPEV+ E+ V+G E+GP IV+ AR++ SLLV+GQKK
Sbjct: 102 DKPTTSRADKKVSALKTMCELKRPEVKTEVVFVKGDEKGPTIVKEAREREASLLVLGQKK 161
Query: 164 RSITWRLLVMWMTXXXXXXXXXTAEYCVQNAACMALAVRRKSRRGGGYLITTRRQRDFWL 223
+ TWRLL++W + EYC+ N+ CMA+AVR++ ++ GGY +TT+R +DFWL
Sbjct: 162 QHATWRLLMVWASQARPVTKHDFVEYCINNSPCMAIAVRKRGKKLGGYTLTTKRHKDFWL 221
Query: 224 LA 225
LA
Sbjct: 222 LA 223
>AT5G17390.1 | chr5:5727640-5728688 FORWARD LENGTH=286
Length = 285
Score = 127 bits (318), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 102/172 (59%), Gaps = 4/172 (2%)
Query: 56 GRKVMVVADGGSDEARTALQWALSHSVRPCDTXXXXXXXXXXXXXXXXXXXXPSRGCQHL 115
G +VMVV D + AL+WA++H+++P DT + + +
Sbjct: 116 GNRVMVVVDKAL-ASTGALEWAITHTLQPQDTLFLLYFAKPFRKSKRKNRKREVKTDELV 174
Query: 116 ETMRSICQAKRPEVRVELSLVEGKER--GPAIVEAARKQGVSLLVMGQKKRSITWRLLVM 173
T++ +CQ KRP + VE+ +EGK++ G IVE ++KQ VSLLV+GQ+K+ WRLL
Sbjct: 175 HTLKKLCQTKRPGIEVEIRRLEGKDKDKGQKIVEESKKQQVSLLVVGQEKKPPVWRLLKR 234
Query: 174 WMTXXXXXXXXXTAEYCVQNAACMALAVRRKSRRGGGYLITTRRQRDFWLLA 225
W +YC++NA+CM +AV+ K+R+ GGYLITT+R ++FWLLA
Sbjct: 235 W-AWKRRRGHEGVLKYCLENASCMTIAVKPKNRKLGGYLITTKRHKNFWLLA 285
>AT2G03720.1 | chr2:1132364-1133225 FORWARD LENGTH=166
Length = 165
Score = 124 bits (310), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 98/169 (57%), Gaps = 7/169 (4%)
Query: 60 MVVADGGSDEARTALQWALSHSVRPCD--TXXXXXXXXXXXXXXXXXXXXPSRGCQHLET 117
MVV D S + + ALQWAL+H V+ D T SR + +
Sbjct: 1 MVVVDTTS-QTKNALQWALTHCVQDEDNITLLHVTRTPVGQAIDETQRERNSRAHELVHP 59
Query: 118 MRSICQAKRPEVRVELSLVE-GKERGPAIVEAARKQGVSLLVMGQKKRSITWRLLVMWMT 176
+++ CQ K+P V+ E+ +VE +E+G IVE ++KQG +LV+GQ+KR+ WR++ W T
Sbjct: 60 LKNFCQLKKPNVKTEIVVVETAEEKGKTIVEESKKQGAGVLVLGQRKRTSKWRVIWKWRT 119
Query: 177 XXXXXXXXXTAEYCVQNAACMALAVRRKSRRGGGYLITTRRQRDFWLLA 225
EYC+ N+ CMA+AVR+KS GGYLITT+R +DFWLLA
Sbjct: 120 --KGGMGGGVVEYCIHNSDCMAIAVRKKS-NNGGYLITTKRHKDFWLLA 165
>AT3G03290.1 | chr3:766745-767742 FORWARD LENGTH=275
Length = 274
Score = 119 bits (299), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 101/175 (57%), Gaps = 4/175 (2%)
Query: 53 SEVGRKVMVVADGGSDEARTALQWALSHSVRPCDTXXXXXXXXXXXXXXXXXXXXPSRGC 112
+E G +VMVV D + AL+WAL H+++ D +
Sbjct: 102 TEAGNRVMVVVDK-VIASTGALEWALKHTLQSQDYLFLLYFSKPFRKGKRKNRKSEVKTD 160
Query: 113 QHLETMRSICQAKRPEVRVELSLVEGKER--GPAIVEAARKQGVSLLVMGQKKRSITWRL 170
+ + T++ +CQ KRP + VE+ ++GKE+ G IVE A++Q VSLLV+G++K+ WRL
Sbjct: 161 ELVHTLKKLCQTKRPGIEVEIRRLQGKEKEKGEKIVEEAKEQQVSLLVVGKEKKPPVWRL 220
Query: 171 LVMWMTXXXXXXXXXTAEYCVQNAACMALAVRRKSRRGGGYLITTRRQRDFWLLA 225
L W T +YC++ A+CM +AV+ K+R+ GGYLITT+R ++FWLLA
Sbjct: 221 LKRW-GWKKRRGRAGTLKYCLEKASCMTIAVKPKNRKLGGYLITTKRHKNFWLLA 274
>AT1G44760.1 | chr1:16896894-16898427 REVERSE LENGTH=214
Length = 213
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 81/169 (47%), Gaps = 18/169 (10%)
Query: 57 RKVMVVADGGSDEARTALQWALSHSVRPCDTXXXXXXXXXXXXXXXXXXXXPSRGCQHLE 116
++VMVV D S ++ A+ WAL+H D PS +
Sbjct: 63 KRVMVVVDE-SSRSKHAMMWALTHLTNKGDLVTLLHVVSPDDEAT------PSLA----Q 111
Query: 117 TMRSICQAKRPEVRVELSLVEGKERGPAIVEAARKQGVSLLVMGQKKRSITWRLLVMWMT 176
++ S+C+A +PEV VE +++G + ++ +K VS+LV+GQKK + L
Sbjct: 112 SLGSLCKACKPEVDVEALVIQGPKLA-TVLSQVKKLEVSVLVLGQKKSAPLISCLC---- 166
Query: 177 XXXXXXXXXTAEYCVQNAACMALAVRRKSRRGGGYLITTRRQRDFWLLA 225
C+ A C+ + VR++ + GGYLI TR Q++FWLLA
Sbjct: 167 --GPSRSEELVNRCINGADCLTIGVRKQCKGVGGYLINTRWQKNFWLLA 213
>AT4G13450.1 | chr4:7815146-7815904 REVERSE LENGTH=220
Length = 219
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 65/117 (55%), Gaps = 7/117 (5%)
Query: 113 QHLETMRSICQAKRPEVRV--ELSLVEGKERGPAIVEAARKQGVSLLVMGQKKRSITWRL 170
LE M+ IC+ +P+VRV E ++G + AI+ K GV ++++GQ+ R+I+ L
Sbjct: 106 NFLEQMKRICEIAQPKVRVHTECIAIDGV-KATAILLHGDKLGVDVIIIGQR-RTISSSL 163
Query: 171 LVMWMTXXXX--XXXXXTAEYCVQNAACMALAVRRKSRRGGGYLITTRRQRDFWLLA 225
L TAEY ++N+ C + V +K + GGY++ T+ ++FWLLA
Sbjct: 164 LGTRRPGGSLRGSKGVDTAEYLIENSKCTCVGVTKKGQN-GGYVLNTKTHKNFWLLA 219
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.130 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,228,998
Number of extensions: 145582
Number of successful extensions: 798
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 782
Number of HSP's successfully gapped: 6
Length of query: 225
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 130
Effective length of database: 8,502,049
Effective search space: 1105266370
Effective search space used: 1105266370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)