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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0428400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : UspA domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.38 (0.0334) R2 : 1.4e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00562 (0.0703) R2dN8 : 1.81e-05 R2N8 : 1.4e-05
σ : 0.629
deviance : 181.51
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
149.89 0.575 3.43 0.304 0.0321 3 -0.0843 17.3 -0.117 3.34 14.96 31 2.01 1
161.29 0.596 3.41 0.0347 0.0427 1.63 0.108 -- -0.116 3.87 24.51 22 2.2 1.36
149.91 0.57 3.43 0.305 0.0327 3 -- 17.2 -0.117 4.05 15.02 32 2.01 1
161.32 0.595 3.41 0.0332 0.0435 1.63 -- -- -0.117 3.5 15.02 32 2.01 1
149.96 0.57 3.43 0.306 -- 3.01 -- 17.1 -0.119 -- 15.02 32 2.01 1
180.13 0.629 3.38 0.0301 0.153 -- -0.0696 -- 0.00542 3.23 -- -- -- --
180.15 0.629 3.38 0.0315 0.153 -- -- -- 0.00583 3.23 -- -- -- --
161.31 0.592 3.41 0.0283 -- 1.63 -- -- -0.111 -- 24.4 31 2.01 0.971
161.35 0.595 3.41 -- 0.0442 1.63 -- -- -0.12 3.5 15.02 32 2.01 1
181.47 0.629 3.38 0.038 -- -- -- -- 0.00984 -- -- -- -- --
180.18 0.628 3.38 -- 0.153 -- -- -- 0.00232 3.23 -- -- -- --
161.34 0.592 3.41 -- -- 1.65 -- -- -0.119 -- 24.4 31 2 1.48
181.51 0.629 3.38 -- -- -- -- -- 0.00562 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 149.90 temperature 15.0 30 > th dose dependent rect. 2 1
4 149.96 temperature 20.0 30 > th dose independent rect. 2 1
5 150.06 wind 5.0 30 < th dose dependent rect. 2 1
8 150.07 wind 9.0 30 < th dose independent rect. 2 1
9 150.07 temperature 10.0 30 > th dose independent rect. 2 1
11 150.07 temperature 30.0 30 < th dose independent rect. 2 1
12 150.07 humidity 50.0 30 > th dose independent rect. 2 1
16 150.07 atmosphere 995.0 30 > th dose independent rect. 2 1
17 150.07 atmosphere 1010.0 30 < th dose independent rect. 2 1
19 150.07 radiation 1.0 30 < th dose independent rect. 2 1
24 150.07 precipitation 0.1 30 < th dose independent rect. 2 1
25 150.07 temperature 10.0 30 > th dose independent rect. 3 23
26 150.07 radiation 1.0 30 < th dose dependent rect. 2 1
31 150.07 precipitation 0.1 30 < th dose dependent rect. 2 1
32 150.08 humidity 50.0 30 > th dose dependent rect. 2 1
33 150.09 wind 5.0 30 < th dose independent rect. 2 1
39 150.19 atmosphere 1005.0 30 > th dose dependent rect. 2 1
41 150.21 atmosphere 1015.0 30 < th dose dependent rect. 2 1
42 150.24 atmosphere 995.0 30 > th dose dependent rect. 2 1
46 150.40 atmosphere 1005.0 30 > th dose independent rect. 2 1
49 150.87 temperature 30.0 30 < th dose dependent rect. 2 1
52 151.58 wind 1.0 30 > th dose independent rect. 2 1
99 154.36 wind 9.0 30 < th dose independent rect. 3 23
109 161.63 atmosphere 995.0 30 > th dose independent rect. 3 23
114 164.70 temperature 10.0 30 > th dose dependent rect. 3 23
117 165.09 atmosphere 1015.0 1440 < th dose independent rect. 3 1
119 165.18 precipitation 0.1 30 < th dose independent rect. 3 23
120 165.18 precipitation 0.1 30 < th dose dependent rect. 3 23
121 165.51 temperature 15.0 1440 > th dose independent rect. 3 1
127 166.86 humidity 50.0 43200 > th dose independent rect. 3 1
134 168.09 wind 1.0 30 < th dose independent rect. 24 3
142 168.58 temperature 15.0 270 > th dose independent rect. 24 23
145 168.75 atmosphere 1015.0 30 < th dose independent rect. 3 23
146 168.77 temperature 15.0 720 > th dose independent rect. 16 23
148 168.83 temperature 15.0 720 > th dose independent rect. 7 8
151 168.90 temperature 15.0 720 > th dose independent rect. 4 23
156 169.38 wind 9.0 4320 < th dose independent rect. 3 1
163 169.47 temperature 30.0 1440 < th dose independent rect. 3 1
167 169.47 humidity 50.0 1440 > th dose independent rect. 3 1
176 169.47 atmosphere 995.0 1440 > th dose independent rect. 3 1
177 169.47 radiation 1.0 1440 < th dose independent rect. 3 1
200 169.47 radiation 1.0 1440 < th dose dependent rect. 3 1
205 169.48 temperature 15.0 720 > th dose independent rect. 11 16
206 169.48 temperature 15.0 720 > th dose independent rect. 3 17
221 169.57 temperature 15.0 1440 > th dose independent rect. 24 4
226 169.67 humidity 90.0 90 < th dose independent rect. 2 1
227 169.67 radiation 10.0 30 < th dose dependent rect. 3 23
239 169.99 temperature 30.0 10 < th dose dependent rect. 23 14
240 170.00 humidity 50.0 30 > th dose independent rect. 3 23
243 170.09 wind 9.0 30 < th dose dependent rect. 3 23
244 170.13 wind 3.0 10 < th dose dependent rect. 23 4
250 170.25 temperature 15.0 720 > th dose independent rect. 23 16
252 170.31 temperature 15.0 1440 > th dose independent rect. 10 18
253 170.32 atmosphere 1015.0 1440 < th dose independent rect. 24 4
254 170.32 wind 1.0 30 > th dose dependent rect. 2 1
257 170.36 temperature 30.0 10 < th dose dependent rect. 23 18
264 170.51 temperature 15.0 720 > th dose independent rect. 15 16
270 170.57 temperature 15.0 1440 > th dose independent rect. 8 20
274 170.61 radiation 10.0 30 < th dose independent rect. 3 23
282 170.73 temperature 15.0 720 > th dose independent rect. 3 8
284 170.76 humidity 50.0 720 > th dose independent rect. 23 16
286 170.77 temperature 15.0 1440 > th dose independent rect. 16 12
290 170.78 atmosphere 1015.0 720 < th dose independent rect. 3 8
303 170.90 humidity 80.0 30 > th dose dependent rect. 23 4
313 171.03 temperature 10.0 10 > th dose dependent rect. 17 23
314 171.04 precipitation 0.1 1440 < th dose independent rect. 9 1
315 171.04 precipitation 0.1 1440 < th dose dependent rect. 9 1
326 171.13 temperature 20.0 10 < th dose dependent rect. 23 14
351 171.27 temperature 15.0 90 > th dose independent rect. 3 12
362 171.34 temperature 25.0 10 < th dose independent rect. 23 4
363 171.34 wind 1.0 10 < th dose independent rect. 14 13
372 171.40 humidity 50.0 43200 > th dose independent rect. 24 4
382 171.43 wind 1.0 10 < th dose independent rect. 17 10
385 171.44 precipitation 0.1 1440 > th dose independent rect. 9 1
386 171.44 precipitation 0.1 1440 > th dose dependent rect. 9 1
390 171.46 wind 1.0 10 < th dose independent rect. 6 21
397 171.51 temperature 15.0 1440 > th dose independent rect. 19 9
408 171.57 temperature 15.0 1440 > th dose independent rect. 8 10
409 171.58 wind 1.0 10 > th dose independent rect. 24 23
411 171.59 temperature 15.0 90 > th dose independent rect. 17 23
415 171.61 atmosphere 1015.0 1440 < th dose independent rect. 24 1
418 171.64 wind 1.0 10 < th dose independent rect. 11 16
420 171.64 temperature 15.0 1440 > th dose independent rect. 24 18
448 171.68 temperature 15.0 720 > th dose independent rect. 15 8
449 171.68 atmosphere 1015.0 720 < th dose independent rect. 24 15
451 171.69 precipitation 0.1 720 < th dose independent rect. 23 16
453 171.69 precipitation 0.1 720 < th dose dependent rect. 23 16
454 171.70 temperature 15.0 720 > th dose independent rect. 1 16
465 171.75 precipitation 0.1 1440 > th dose independent rect. 2 1
467 171.75 precipitation 0.1 1440 > th dose dependent rect. 2 1
475 171.78 temperature 15.0 1440 > th dose independent rect. 6 12
489 171.81 temperature 20.0 10 < th dose dependent rect. 3 22
498 171.85 precipitation 0.1 1440 > th dose independent rect. 6 1
500 171.85 precipitation 0.1 1440 > th dose dependent rect. 6 1
501 171.85 temperature 20.0 10 < th dose dependent rect. 11 14
506 171.87 temperature 15.0 1440 > th dose independent rect. 10 8
507 171.87 temperature 15.0 90 > th dose independent rect. 3 19
515 171.88 temperature 20.0 10 < th dose dependent rect. 7 18
554 171.99 atmosphere 1015.0 1440 < th dose independent rect. 1 9
556 172.00 temperature 15.0 720 > th dose independent rect. 5 16
593 172.07 wind 1.0 10 < th dose independent rect. 8 19
599 172.07 temperature 20.0 10 < th dose dependent rect. 11 18
601 172.08 wind 7.0 90 < th dose independent rect. 3 12
602 172.08 temperature 15.0 1440 > th dose independent rect. 8 12
606 172.09 humidity 90.0 10 > th dose independent rect. 23 4
620 172.12 temperature 15.0 1440 > th dose independent rect. 10 10
634 172.15 temperature 15.0 1440 > th dose independent rect. 2 23
665 172.23 humidity 50.0 720 > th dose independent rect. 7 8
674 172.25 temperature 20.0 10 < th dose dependent sin 6 NA
685 172.27 atmosphere 1015.0 1440 < th dose independent rect. 1 7
702 172.29 atmosphere 1005.0 270 > th dose dependent rect. 23 4
705 172.29 temperature 20.0 10 < th dose dependent rect. 16 21
708 172.30 temperature 15.0 1440 > th dose independent rect. 10 3
738 172.35 humidity 90.0 720 > th dose independent rect. 11 3
739 172.35 temperature 20.0 10 < th dose dependent no NA NA
780 172.39 temperature 15.0 1440 > th dose independent rect. 11 1
790 172.40 wind 7.0 10 < th dose independent rect. 3 20
792 172.40 temperature 15.0 1440 > th dose independent rect. 8 23
793 172.40 temperature 15.0 1440 > th dose independent rect. 12 23
794 172.40 temperature 10.0 30 > th dose dependent rect. 17 9
812 172.42 temperature 15.0 1440 > th dose independent rect. 10 23
819 172.43 temperature 15.0 1440 > th dose independent rect. 10 21
825 172.44 temperature 15.0 720 > th dose independent rect. 5 8
826 172.44 temperature 15.0 1440 > th dose independent rect. 6 14
828 172.44 temperature 15.0 1440 > th dose independent rect. 19 23
841 172.47 atmosphere 1000.0 14400 < th dose independent rect. 4 1
854 172.48 wind 7.0 1440 > th dose independent rect. 7 1
859 172.48 humidity 70.0 4320 < th dose dependent rect. 19 1
869 172.50 precipitation 0.1 1440 < th dose independent rect. 1 2
871 172.50 precipitation 0.1 1440 < th dose dependent rect. 1 2
882 172.53 precipitation 0.1 1440 > th dose independent rect. 8 5
883 172.53 temperature 15.0 1440 > th dose independent rect. 23 8
886 172.53 precipitation 0.1 1440 > th dose dependent rect. 8 5
890 172.54 temperature 15.0 1440 > th dose independent rect. 9 1
899 172.55 temperature 30.0 30 < th dose dependent rect. 23 4
904 172.56 temperature 15.0 720 > th dose independent rect. 3 12
905 172.56 temperature 15.0 1440 > th dose independent rect. 6 19
908 172.56 humidity 90.0 1440 > th dose dependent rect. 9 4
909 172.57 temperature 15.0 1440 > th dose independent rect. 14 23
915 172.59 humidity 90.0 1440 > th dose independent rect. 9 4
916 172.59 humidity 90.0 1440 > th dose dependent rect. 10 2
939 172.62 temperature 10.0 720 > th dose dependent rect. 3 1
976 172.66 temperature 15.0 1440 > th dose independent rect. 8 17
986 172.67 temperature 15.0 1440 > th dose independent no NA NA