BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0428400 Os05g0428400|Os05g0428400
(225 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G44760.1 | chr1:16896894-16898427 REVERSE LENGTH=214 209 9e-55
AT1G69080.1 | chr1:25972132-25973243 REVERSE LENGTH=224 100 5e-22
AT2G03720.1 | chr2:1132364-1133225 FORWARD LENGTH=166 96 1e-20
AT3G03290.1 | chr3:766745-767742 FORWARD LENGTH=275 89 1e-18
AT5G17390.1 | chr5:5727640-5728688 FORWARD LENGTH=286 89 2e-18
AT4G13450.1 | chr4:7815146-7815904 REVERSE LENGTH=220 57 1e-08
>AT1G44760.1 | chr1:16896894-16898427 REVERSE LENGTH=214
Length = 213
Score = 209 bits (532), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 107/157 (68%), Positives = 121/157 (77%), Gaps = 2/157 (1%)
Query: 71 EAPAGRKRVMVVVDQSSGAKHAMMWALTHVASKGDFLTLLHVLPHGGGDASALANSLGSL 130
+ A KRVMVVVD+SS +KHAMMWALTH+ +KGD +TLLHV+ +LA SLGSL
Sbjct: 57 DTAARSKRVMVVVDESSRSKHAMMWALTHLTNKGDLVTLLHVVSPDDEATPSLAQSLGSL 116
Query: 131 CKACKPEVEVEALVIQGPKLGTVLSQVKKLDASVLVLSQCKPSPF--CCFMRSSGEEFVE 188
CKACKPEV+VEALVIQGPKL TVLSQVKKL+ SVLVL Q K +P C S EE V
Sbjct: 117 CKACKPEVDVEALVIQGPKLATVLSQVKKLEVSVLVLGQKKSAPLISCLCGPSRSEELVN 176
Query: 189 ECINRADCLTLAVRRQSKGVGGYLISTRWQKNFWLLA 225
CIN ADCLT+ VR+Q KGVGGYLI+TRWQKNFWLLA
Sbjct: 177 RCINGADCLTIGVRKQCKGVGGYLINTRWQKNFWLLA 213
>AT1G69080.1 | chr1:25972132-25973243 REVERSE LENGTH=224
Length = 223
Score = 100 bits (250), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 97/180 (53%), Gaps = 31/180 (17%)
Query: 77 KRVMVVVDQSSGAKHAMMWALTHVASKGDFLTLLHVLPHGGGDASALAN----------- 125
+R++VVVD S AK+A++W L+H A D + LLH L + LAN
Sbjct: 44 RRIIVVVDSCSEAKNALLWTLSHCAQPQDSILLLHFLKAKTSQSGDLANKEEGEDESCDK 103
Query: 126 -----------SLGSLCKACKPEVEVEALVIQGPKLG-TVLSQVKKLDASVLVLSQCKPS 173
+L ++C+ +PEV+ E + ++G + G T++ + ++ +AS+LVL Q K
Sbjct: 104 PTTSRADKKVSALKTMCELKRPEVKTEVVFVKGDEKGPTIVKEAREREASLLVLGQKKQH 163
Query: 174 PFCCFMRS--------SGEEFVEECINRADCLTLAVRRQSKGVGGYLISTRWQKNFWLLA 225
+ + +FVE CIN + C+ +AVR++ K +GGY ++T+ K+FWLLA
Sbjct: 164 ATWRLLMVWASQARPVTKHDFVEYCINNSPCMAIAVRKRGKKLGGYTLTTKRHKDFWLLA 223
>AT2G03720.1 | chr2:1132364-1133225 FORWARD LENGTH=166
Length = 165
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 91/166 (54%), Gaps = 21/166 (12%)
Query: 80 MVVVDQSSGAKHAMMWALTHVASKGDFLTLLHV--LPHG----------GGDASALANSL 127
MVVVD +S K+A+ WALTH D +TLLHV P G A L + L
Sbjct: 1 MVVVDTTSQTKNALQWALTHCVQDEDNITLLHVTRTPVGQAIDETQRERNSRAHELVHPL 60
Query: 128 GSLCKACKPEVEVEALVIQG--PKLGTVLSQVKKLDASVLVLSQCKPSPFCCFM---RSS 182
+ C+ KP V+ E +V++ K T++ + KK A VLVL Q K + + R+
Sbjct: 61 KNFCQLKKPNVKTEIVVVETAEEKGKTIVEESKKQGAGVLVLGQRKRTSKWRVIWKWRTK 120
Query: 183 GEE---FVEECINRADCLTLAVRRQSKGVGGYLISTRWQKNFWLLA 225
G VE CI+ +DC+ +AVR++S GGYLI+T+ K+FWLLA
Sbjct: 121 GGMGGGVVEYCIHNSDCMAIAVRKKSNN-GGYLITTKRHKDFWLLA 165
>AT3G03290.1 | chr3:766745-767742 FORWARD LENGTH=275
Length = 274
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 89/168 (52%), Gaps = 20/168 (11%)
Query: 78 RVMVVVDQSSGAKHAMMWALTHVASKGDFLTLLHV-LPHGGGD---------ASALANSL 127
RVMVVVD+ + A+ WAL H D+L LL+ P G L ++L
Sbjct: 107 RVMVVVDKVIASTGALEWALKHTLQSQDYLFLLYFSKPFRKGKRKNRKSEVKTDELVHTL 166
Query: 128 GSLCKACKPEVEVEALVIQGP---KLGTVLSQVKKLDASVLVLSQCKPSPFCCFMRSSGE 184
LC+ +P +EVE +QG K ++ + K+ S+LV+ + K P ++ G
Sbjct: 167 KKLCQTKRPGIEVEIRRLQGKEKEKGEKIVEEAKEQQVSLLVVGKEKKPPVWRLLKRWGW 226
Query: 185 E-------FVEECINRADCLTLAVRRQSKGVGGYLISTRWQKNFWLLA 225
+ ++ C+ +A C+T+AV+ +++ +GGYLI+T+ KNFWLLA
Sbjct: 227 KKRRGRAGTLKYCLEKASCMTIAVKPKNRKLGGYLITTKRHKNFWLLA 274
>AT5G17390.1 | chr5:5727640-5728688 FORWARD LENGTH=286
Length = 285
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 89/171 (52%), Gaps = 20/171 (11%)
Query: 75 GRKRVMVVVDQSSGAKHAMMWALTHVASKGDFLTLLHVL-PHGGG---------DASALA 124
G RVMVVVD++ + A+ WA+TH D L LL+ P L
Sbjct: 115 GGNRVMVVVDKALASTGALEWAITHTLQPQDTLFLLYFAKPFRKSKRKNRKREVKTDELV 174
Query: 125 NSLGSLCKACKPEVEVEALVIQGP---KLGTVLSQVKKLDASVLVLSQCKPSPFCCFM-- 179
++L LC+ +P +EVE ++G K ++ + KK S+LV+ Q K P +
Sbjct: 175 HTLKKLCQTKRPGIEVEIRRLEGKDKDKGQKIVEESKKQQVSLLVVGQEKKPPVWRLLKR 234
Query: 180 ----RSSGEEFV-EECINRADCLTLAVRRQSKGVGGYLISTRWQKNFWLLA 225
R G E V + C+ A C+T+AV+ +++ +GGYLI+T+ KNFWLLA
Sbjct: 235 WAWKRRRGHEGVLKYCLENASCMTIAVKPKNRKLGGYLITTKRHKNFWLLA 285
>AT4G13450.1 | chr4:7815146-7815904 REVERSE LENGTH=220
Length = 219
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 83/217 (38%), Gaps = 61/217 (28%)
Query: 67 RSREEAPAGRKRVMVVVDQSSGAKHAMMWALTHVASKGDFLTLLHVLPHGG--------- 117
R P RK +MV+ D + + A+ +AL+H + D L L+H+ GG
Sbjct: 6 RGSSSTPQSRK-IMVIADPTRESAAALQYALSHAVLEQDELILVHIENSGGSWKNAFSSF 64
Query: 118 --------------------------------------GDASALANSLGSLCKACKPEVE 139
GD + L + +C+ +P+V
Sbjct: 65 LRLPSSISSSSSGSSPASNGTTTASNAAANALASEIGQGDGNFL-EQMKRICEIAQPKVR 123
Query: 140 V--EALVIQGPKLGTVLSQVKKLDASVLVLSQCKP---------SPFCCFMRSSGEEFVE 188
V E + I G K +L KL V+++ Q + P S G + E
Sbjct: 124 VHTECIAIDGVKATAILLHGDKLGVDVIIIGQRRTISSSLLGTRRPGGSLRGSKGVDTAE 183
Query: 189 ECINRADCLTLAVRRQSKGVGGYLISTRWQKNFWLLA 225
I + C + V ++ + GGY+++T+ KNFWLLA
Sbjct: 184 YLIENSKCTCVGVTKKGQN-GGYVLNTKTHKNFWLLA 219
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.132 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,411,388
Number of extensions: 149456
Number of successful extensions: 397
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 388
Number of HSP's successfully gapped: 6
Length of query: 225
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 130
Effective length of database: 8,502,049
Effective search space: 1105266370
Effective search space used: 1105266370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)