BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0420300 Os12g0420300|AK071692
(93 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0420300 Putative tyrosine phosphatase family protein 194 1e-50
Os09g0135700 Putative tyrosine phosphatase family protein 110 2e-25
Os06g0208700 Putative tyrosine phosphatase family protein 105 8e-24
Os02g0771400 Putative tyrosine phosphatase family protein 103 2e-23
>Os12g0420300 Putative tyrosine phosphatase family protein
Length = 93
Score = 194 bits (492), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 93/93 (100%), Positives = 93/93 (100%)
Query: 1 GEQDVRNHPVLIHCKRGKHRTGCLVGCFRKLQNWCLSSVFEEYHRYAAGKSRLSDLKFIE 60
GEQDVRNHPVLIHCKRGKHRTGCLVGCFRKLQNWCLSSVFEEYHRYAAGKSRLSDLKFIE
Sbjct: 1 GEQDVRNHPVLIHCKRGKHRTGCLVGCFRKLQNWCLSSVFEEYHRYAAGKSRLSDLKFIE 60
Query: 61 SFDVNCMTDCLLRLIYHYHGCLQKSKRLAYSER 93
SFDVNCMTDCLLRLIYHYHGCLQKSKRLAYSER
Sbjct: 61 SFDVNCMTDCLLRLIYHYHGCLQKSKRLAYSER 93
>Os09g0135700 Putative tyrosine phosphatase family protein
Length = 222
Score = 110 bits (275), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 57/64 (89%)
Query: 4 DVRNHPVLIHCKRGKHRTGCLVGCFRKLQNWCLSSVFEEYHRYAAGKSRLSDLKFIESFD 63
DV NHPVLIHCKRGKHRTGC+VGC RKLQ WCL+S+F+EY R+AA K+R+SDL+F+E FD
Sbjct: 150 DVANHPVLIHCKRGKHRTGCVVGCLRKLQRWCLTSIFDEYQRFAAAKARVSDLRFMELFD 209
Query: 64 VNCM 67
++ +
Sbjct: 210 ISSL 213
>Os06g0208700 Putative tyrosine phosphatase family protein
Length = 226
Score = 105 bits (262), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 55/64 (85%)
Query: 4 DVRNHPVLIHCKRGKHRTGCLVGCFRKLQNWCLSSVFEEYHRYAAGKSRLSDLKFIESFD 63
DV+N P+LIHCKRGKHRTGC+VGC RKLQ WCLSSVF+EY R+AA K+R +D +F+E FD
Sbjct: 155 DVKNQPLLIHCKRGKHRTGCVVGCLRKLQKWCLSSVFDEYQRFAAAKARSTDQRFMELFD 214
Query: 64 VNCM 67
++ +
Sbjct: 215 ISSL 218
>Os02g0771400 Putative tyrosine phosphatase family protein
Length = 204
Score = 103 bits (257), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 53/64 (82%)
Query: 4 DVRNHPVLIHCKRGKHRTGCLVGCFRKLQNWCLSSVFEEYHRYAAGKSRLSDLKFIESFD 63
DVRN PVLIHCKRGKHRTGC+VGC RKLQ WCL+SVF+EY +AA K+R +D +F+E FD
Sbjct: 133 DVRNQPVLIHCKRGKHRTGCVVGCLRKLQKWCLTSVFDEYQHFAAAKARSTDQRFMELFD 192
Query: 64 VNCM 67
+ +
Sbjct: 193 TSSL 196
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.328 0.141 0.470
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,248,636
Number of extensions: 112144
Number of successful extensions: 242
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 4
Length of query: 93
Length of database: 17,035,801
Length adjustment: 62
Effective length of query: 31
Effective length of database: 13,798,533
Effective search space: 427754523
Effective search space used: 427754523
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 149 (62.0 bits)