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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0135700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Putative tyrosine phosphatase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.6 (0.0242) R2 : 0.393
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.989 (0.0578) R2dC : 0.391 R2C : 0.388
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0905 (0.051) R2dN8 : 0.00541 R2N8 : 0.00221
σ : 0.457
deviance : 95.43
__
_____
C
peak time of C : 23.4
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
69.46 0.392 11.6 1.2 0.966 0.777 1.05 -2.06 0.0216 23.4 29.8 5988 -- --
72.36 0.396 11.6 0.823 1.02 0.687 1.24 -- 0.137 23.1 29.09 7418 -- --
74.08 0.401 11.6 1.19 0.976 0.778 -- -2.01 0.0567 23.3 29.7 6058 -- --
73.08 0.398 11.5 0.875 0.997 0.69 -- -- 0.252 23.4 29.53 21749 -- --
130.38 0.532 11.5 1.82 -- 1.06 -- -5 0.091 -- 29.96 5987 -- --
84.81 0.432 11.6 0.55 0.987 -- 0.926 -- -0.0302 23.4 -- -- -- --
88.5 0.441 11.6 0.513 0.983 -- -- -- -0.0334 23.4 -- -- -- --
130.41 0.534 11.6 0.631 -- 0.61 -- -- -0.023 -- 29.53 21749 -- --
88.41 0.438 11.6 -- 1.01 0.49 -- -- 0.15 23.4 31.4 18064 -- --
149.09 0.571 11.6 0.538 -- -- -- -- -0.0236 -- -- -- -- --
95.43 0.457 11.6 -- 0.989 -- -- -- -0.0905 23.4 -- -- -- --
140.78 0.554 11.6 -- -- 0.561 -- -- -0.0922 -- 29.53 21749 -- --
156.73 0.584 11.6 -- -- -- -- -- -0.0833 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 65.33 humidity 80 43200 < th dose independent rect. 4 11
2 65.35 humidity 80 43200 > th dose independent rect. 5 9
3 65.35 humidity 80 43200 > th dose independent rect. 4 11
4 65.47 humidity 80 43200 < th dose independent sin 2 NA
5 65.53 humidity 80 43200 > th dose independent sin 2 NA
6 65.55 humidity 80 43200 < th dose independent rect. 2 15
7 65.56 humidity 70 43200 > th dose dependent rect. 3 12
8 65.57 humidity 80 43200 < th dose independent rect. 3 13
9 65.60 humidity 80 43200 > th dose independent rect. 2 19
11 65.67 humidity 70 43200 > th dose dependent rect. 2 14
12 65.68 humidity 70 43200 > th dose dependent sin 3 NA
17 65.72 humidity 70 43200 > th dose dependent rect. 1 19
18 65.77 humidity 80 43200 > th dose independent rect. 3 14
21 65.80 humidity 80 43200 < th dose independent rect. 1 19
53 66.19 humidity 70 43200 > th dose dependent rect. 8 18
113 66.58 humidity 70 43200 > th dose dependent sin 18 NA
126 66.66 radiation 1 43200 < th dose dependent rect. 16 1
142 66.73 radiation 1 43200 > th dose independent rect. 8 9
147 66.75 radiation 1 43200 < th dose independent rect. 8 9
186 67.06 humidity 80 43200 > th dose dependent rect. 21 2
187 67.06 humidity 80 43200 > th dose dependent rect. 20 4
195 67.09 humidity 70 43200 > th dose dependent no NA NA
200 67.13 radiation 1 43200 < th dose dependent rect. 8 9
204 67.17 humidity 80 43200 > th dose independent rect. 8 17
219 67.28 humidity 80 43200 < th dose independent rect. 8 16
234 67.37 temperature 30 14400 < th dose independent rect. 16 2
238 67.39 temperature 30 14400 > th dose independent rect. 16 2
240 67.39 humidity 70 43200 > th dose dependent rect. 17 23
248 67.43 radiation 1 43200 < th dose independent rect. 10 3
252 67.45 radiation 1 43200 > th dose independent rect. 10 3
253 67.45 temperature 30 14400 < th dose independent rect. 16 14
256 67.46 temperature 30 14400 < th dose independent rect. 16 6
257 67.46 temperature 30 14400 < th dose independent rect. 16 8
266 67.46 temperature 30 43200 > th dose dependent rect. 14 1
291 67.48 humidity 60 43200 > th dose dependent rect. 12 3
292 67.49 radiation 1 43200 < th dose dependent rect. 10 3
294 67.50 humidity 80 43200 > th dose dependent rect. 12 21
302 67.51 humidity 60 43200 > th dose dependent rect. 12 1
416 67.57 radiation 1 43200 > th dose independent rect. 16 1
445 67.59 radiation 1 43200 < th dose independent rect. 16 1
446 67.59 temperature 30 43200 > th dose dependent sin 15 NA
453 67.60 temperature 30 43200 < th dose independent sin 12 NA
497 67.63 temperature 30 43200 > th dose independent sin 12 NA
653 67.68 temperature 30 43200 < th dose independent rect. 14 21
655 67.68 temperature 30 43200 > th dose dependent no NA NA
777 67.70 temperature 30 43200 > th dose independent rect. 14 21
786 67.71 radiation 1 43200 > th dose independent rect. 13 4
807 67.72 humidity 80 43200 > th dose dependent sin 14 NA
841 67.74 radiation 1 43200 < th dose independent rect. 13 4
843 67.74 temperature 30 43200 < th dose independent rect. 10 9
866 67.75 temperature 30 43200 > th dose independent rect. 10 8
941 67.77 temperature 30 43200 < th dose independent no NA NA