BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0135700 Os09g0135700|AK121831
(222 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G03960.1 | chr4:1887673-1889000 FORWARD LENGTH=199 259 8e-70
AT1G05000.2 | chr1:1425660-1428393 FORWARD LENGTH=248 255 1e-68
AT2G32960.1 | chr2:13987976-13990720 FORWARD LENGTH=258 245 1e-65
AT3G02800.1 | chr3:606638-607704 REVERSE LENGTH=204 204 3e-53
AT5G16480.1 | chr5:5381334-5382618 REVERSE LENGTH=205 198 2e-51
>AT4G03960.1 | chr4:1887673-1889000 FORWARD LENGTH=199
Length = 198
Score = 259 bits (662), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 116/161 (72%), Positives = 143/161 (88%)
Query: 62 LLVPPLNFAMVDHGVYRSGFPDISNLPFVESLRLRSVLCLCPEPYPEANQEFLRAHGIRL 121
L VPPLNFAMVD+G++RSGFP+ + F++SLRL+S++ LCPE YPE N+EF +++GI++
Sbjct: 28 LFVPPLNFAMVDNGIFRSGFPEPVSFSFLQSLRLKSIIYLCPEAYPEVNREFAKSNGIQV 87
Query: 122 FQFGIDGSKEPFVNIPEDRIREALKVVLDVANHPVLIHCKRGKHRTGCVVGCLRKLQRWC 181
FQFGI+ KEPFVNIP++ IREAL+V+LD NHPVLIHCK GKHRTGC+VGC+RK+QRWC
Sbjct: 88 FQFGIERCKEPFVNIPDEVIREALQVLLDTENHPVLIHCKSGKHRTGCLVGCVRKIQRWC 147
Query: 182 LTSIFDEYQRFAAAKARVSDLRFMELFDISSLKHLPASFSC 222
L+SIFDEYQRFAAAKAR+SD RFMELFDIS+LKH P SFSC
Sbjct: 148 LSSIFDEYQRFAAAKARISDQRFMELFDISNLKHTPLSFSC 188
>AT1G05000.2 | chr1:1425660-1428393 FORWARD LENGTH=248
Length = 247
Score = 255 bits (651), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 120/192 (62%), Positives = 146/192 (76%), Gaps = 32/192 (16%)
Query: 63 LVPPLNFAMVDHGVYRSGFPDISNLPFVESLRLRSVLCLCPEPYPEANQEFLRAHGIRLF 122
L+PPLNF+MVD+G++RSGFPD +N F+++L LRS++ LCPEPYPE+N +FL+++GIRLF
Sbjct: 53 LIPPLNFSMVDNGIFRSGFPDSANFSFLQTLGLRSIIYLCPEPYPESNLQFLKSNGIRLF 112
Query: 123 QFGIDGSK--------------------------------EPFVNIPEDRIREALKVVLD 150
QFGI+G+K EPFVNIP+ +IR ALKV+LD
Sbjct: 113 QFGIEGNKCVPDLDNEISLHLWNSKHQKQGPLTNGLSKTLEPFVNIPDHKIRMALKVLLD 172
Query: 151 VANHPVLIHCKRGKHRTGCVVGCLRKLQRWCLTSIFDEYQRFAAAKARVSDLRFMELFDI 210
NHPVLIHCKRGKHRTGC+VGCLRKLQ+WCLTSIFDEYQRFAAAKARVSD RFME+FD+
Sbjct: 173 EKNHPVLIHCKRGKHRTGCLVGCLRKLQKWCLTSIFDEYQRFAAAKARVSDQRFMEIFDV 232
Query: 211 SSLKHLPASFSC 222
SS H+P SFSC
Sbjct: 233 SSFSHIPMSFSC 244
>AT2G32960.1 | chr2:13987976-13990720 FORWARD LENGTH=258
Length = 257
Score = 245 bits (626), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 114/194 (58%), Positives = 142/194 (73%), Gaps = 34/194 (17%)
Query: 63 LVPPLNFAMVDHGVYRSGFPDISNLPFVESLRLRSVLCLCPEPYPEANQEFLRAHGIRLF 122
L+PPLNF+MVD+G++RSGFPD +N F+++L LRS++ LCPEPYPE N +FL+++GI LF
Sbjct: 61 LIPPLNFSMVDNGIFRSGFPDSANFSFIKTLGLRSIISLCPEPYPENNMQFLKSNGISLF 120
Query: 123 QFGIDGSK----------------------------------EPFVNIPEDRIREALKVV 148
QFGI+GSK EPFV+I + +IREALKV+
Sbjct: 121 QFGIEGSKSKCLPGLENEVWLHIWSSKHQKEDFYTNGNSKTSEPFVDILDQKIREALKVL 180
Query: 149 LDVANHPVLIHCKRGKHRTGCVVGCLRKLQRWCLTSIFDEYQRFAAAKARVSDLRFMELF 208
LD NHP+LIHCKRGKHRTGC+VGC+RKLQ+WC+TSI DEY+RFAAAKARVSD RF+E F
Sbjct: 181 LDEKNHPLLIHCKRGKHRTGCLVGCMRKLQKWCITSILDEYKRFAAAKARVSDQRFLESF 240
Query: 209 DISSLKHLPASFSC 222
D+S LKH P SFSC
Sbjct: 241 DVSGLKHTPMSFSC 254
>AT3G02800.1 | chr3:606638-607704 REVERSE LENGTH=204
Length = 203
Score = 204 bits (519), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 90/154 (58%), Positives = 120/154 (77%)
Query: 62 LLVPPLNFAMVDHGVYRSGFPDISNLPFVESLRLRSVLCLCPEPYPEANQEFLRAHGIRL 121
+L PP NF+MV+ G+YRSGFP N F+++L LRS++ LCPEPYPE N +FL A+ I+L
Sbjct: 14 VLAPPSNFSMVEDGIYRSGFPRPENFSFLKTLNLRSIIYLCPEPYPEENLKFLEANNIKL 73
Query: 122 FQFGIDGSKEPFVNIPEDRIREALKVVLDVANHPVLIHCKRGKHRTGCVVGCLRKLQRWC 181
+QFGI+G +P +P+D + +ALKV++DV NHP+LIHCKRGKHRTGC+VGCLRK+Q WC
Sbjct: 74 YQFGIEGKTDPPTPMPKDTVLDALKVLVDVRNHPILIHCKRGKHRTGCLVGCLRKVQSWC 133
Query: 182 LTSIFDEYQRFAAAKARVSDLRFMELFDISSLKH 215
L+S+ +EYQ+ A K R DL F+E FDI SL+
Sbjct: 134 LSSVLEEYQKNAGLKWRQRDLNFIEAFDIVSLRQ 167
>AT5G16480.1 | chr5:5381334-5382618 REVERSE LENGTH=205
Length = 204
Score = 198 bits (503), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 87/154 (56%), Positives = 119/154 (77%)
Query: 62 LLVPPLNFAMVDHGVYRSGFPDISNLPFVESLRLRSVLCLCPEPYPEANQEFLRAHGIRL 121
+L+PP NF+MV+ +YRSGFP++ N F+ +L LRS++ LCPEPYPE N + L ++ I+L
Sbjct: 13 VLIPPPNFSMVEDEIYRSGFPELENFGFLSTLNLRSIIYLCPEPYPEDNLKSLASNNIKL 72
Query: 122 FQFGIDGSKEPFVNIPEDRIREALKVVLDVANHPVLIHCKRGKHRTGCVVGCLRKLQRWC 181
FQFGI+G +P +P+D + AL+V++DV NHP+LIHCKRGKHRTGC+VGCLRK+Q WC
Sbjct: 73 FQFGIEGKTDPPTPMPKDTVLSALRVLVDVRNHPILIHCKRGKHRTGCLVGCLRKVQNWC 132
Query: 182 LTSIFDEYQRFAAAKARVSDLRFMELFDISSLKH 215
L+S+ +EYQ+ A K R DLRF+E FD+ LK
Sbjct: 133 LSSVLEEYQKCAGLKWRQRDLRFIEDFDVLRLKQ 166
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.141 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,484,912
Number of extensions: 172701
Number of successful extensions: 419
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 419
Number of HSP's successfully gapped: 7
Length of query: 222
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 127
Effective length of database: 8,502,049
Effective search space: 1079760223
Effective search space used: 1079760223
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 110 (47.0 bits)