Os06g0208700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Putative tyrosine phosphatase family protein.
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Os06g0208700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Putative tyrosine phosphatase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 150.87 | 0.577 | 10.9 | 0.0729 | 2.59 | -1.6 | -0.855 | 2.27 | 0.326 | 0.947 | 26.47 | 747 | -- | -- |
| 157.48 | 0.584 | 11 | -0.257 | 2.66 | -1.46 | -0.262 | -- | 0.228 | 1.11 | 26.58 | 809 | -- | -- |
| 153.2 | 0.576 | 10.9 | 0.145 | 2.65 | -1.7 | -- | 2.5 | 0.302 | 1.04 | 26.7 | 812 | -- | -- |
| 157.01 | 0.584 | 11 | -0.405 | 2.7 | -1.56 | -- | -- | 0.184 | 1.27 | 26.5 | 862 | -- | -- |
| 371.58 | 0.903 | 10.9 | -0.342 | -- | -1.47 | -- | 0.262 | 0.316 | -- | 26.7 | 812 | -- | -- |
| 218.51 | 0.693 | 11 | -0.915 | 2.42 | -- | -0.94 | -- | -0.188 | 2.08 | -- | -- | -- | -- |
| 221.86 | 0.698 | 11 | -0.887 | 2.42 | -- | -- | -- | -0.183 | 2.07 | -- | -- | -- | -- |
| 365.74 | 0.895 | 10.9 | -0.405 | -- | -1.48 | -- | -- | 0.292 | -- | 26.5 | 862 | -- | -- |
| 161.16 | 0.591 | 11 | -- | 2.69 | -1.66 | -- | -- | 0.209 | 1.19 | 26.6 | 854 | -- | -- |
| 574.02 | 1.12 | 11 | -0.786 | -- | -- | -- | -- | -0.125 | -- | -- | -- | -- | -- |
| 242.61 | 0.729 | 11 | -- | 2.41 | -- | -- | -- | -0.0837 | 2.07 | -- | -- | -- | -- |
| 370 | 0.899 | 10.9 | -- | -- | -1.51 | -- | -- | 0.344 | -- | 26.5 | 862 | -- | -- |
| 590.33 | 1.13 | 11 | -- | -- | -- | -- | -- | -0.0379 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 140.51 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 19 |
| 7 | 145.90 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 11 |
| 10 | 146.19 | temperature | 20 | 720 | > th | dose dependent | rect. | 11 | 13 |
| 17 | 147.13 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 11 |
| 27 | 148.16 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 21 |
| 35 | 148.87 | temperature | 20 | 720 | > th | dose dependent | sin | 20 | NA |
| 43 | 149.27 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 50 | 149.87 | temperature | 30 | 720 | < th | dose dependent | rect. | 10 | 10 |
| 53 | 150.09 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 18 |
| 69 | 150.58 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 5 |
| 86 | 150.94 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 123 | 151.91 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 21 |
| 135 | 152.19 | temperature | 20 | 10 | > th | dose dependent | sin | 15 | NA |
| 152 | 152.58 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 15 |
| 162 | 152.83 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 6 |
| 197 | 153.49 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 18 |
| 206 | 153.70 | temperature | 25 | 720 | < th | dose independent | rect. | 8 | 14 |
| 213 | 153.82 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 220 | 154.03 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 7 |
| 225 | 154.12 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 19 |
| 240 | 154.37 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 22 |
| 271 | 154.67 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 10 |
| 306 | 155.06 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 23 |
| 316 | 155.16 | temperature | 25 | 720 | > th | dose independent | sin | 20 | NA |
| 349 | 155.62 | radiation | 30 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 378 | 155.88 | temperature | 30 | 720 | < th | dose dependent | sin | 20 | NA |
| 396 | 155.99 | temperature | 25 | 270 | > th | dose independent | rect. | 10 | 14 |
| 412 | 156.08 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 419 | 156.13 | temperature | 25 | 720 | < th | dose independent | sin | 20 | NA |
| 486 | 156.60 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 514 | 156.82 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 520 | 156.88 | temperature | 25 | 720 | > th | dose independent | rect. | 12 | 9 |
| 526 | 156.94 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 544 | 157.08 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 5 |
| 553 | 157.12 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 21 |
| 580 | 157.40 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 598 | 157.56 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 23 |
| 641 | 158.11 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 642 | 158.11 | temperature | 30 | 10 | < th | dose dependent | rect. | 8 | 23 |
| 660 | 158.25 | temperature | 20 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 722 | 158.72 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 724 | 158.73 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 759 | 159.07 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 760 | 159.09 | temperature | 30 | 10 | < th | dose dependent | sin | 16 | NA |
| 786 | 159.33 | radiation | 10 | 14400 | > th | dose dependent | rect. | 17 | 13 |
| 806 | 159.48 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 819 | 159.55 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 852 | 159.85 | radiation | 1 | 720 | < th | dose dependent | rect. | 10 | 9 |
| 867 | 159.94 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 886 | 160.05 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 897 | 160.14 | radiation | 1 | 720 | < th | dose independent | rect. | 16 | 3 |
| 907 | 160.23 | radiation | 10 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 922 | 160.25 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 23 |
| 975 | 160.67 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 976 | 160.68 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 4 |