BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0197700 Os12g0197700|AK100699
(682 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0197700 Region of unknown function, putative Zinc fing... 1233 0.0
Os12g0197500 Region of unknown function, putative Zinc fing... 596 e-170
Os03g0159200 Region of unknown function XS domain containin... 70 4e-12
>Os12g0197700 Region of unknown function, putative Zinc finger, XS and XH domain
containing protein
Length = 682
Score = 1233 bits (3189), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 598/658 (90%), Positives = 598/658 (90%)
Query: 25 YSWXXXXXXXXXXXXXXXQCAPCTSSNAAPKPAMAWQARSGNGSLHPPGNGRVQHSDHRP 84
YSW QCAPCTSSNAAPKPAMAWQARSGNGSLHPPGNGRVQHSDHRP
Sbjct: 25 YSWVEKKSKKSEKSVGKGQCAPCTSSNAAPKPAMAWQARSGNGSLHPPGNGRVQHSDHRP 84
Query: 85 AARGSPRSLPQNKHTETKLQAPCPVVTAPLANGLQWVPKSRSSGSESNMDDAPTSGSDPE 144
AARGSPRSLPQNKHTETKLQAPCPVVTAPLANGLQWVPKSRSSGSESNMDDAPTSGSDPE
Sbjct: 85 AARGSPRSLPQNKHTETKLQAPCPVVTAPLANGLQWVPKSRSSGSESNMDDAPTSGSDPE 144
Query: 145 MDNGATHPVVTATLANGLQWVPRSRSSDSQSNKDDAPTASSDPETDNXXXXXXXXXXXXN 204
MDNGATHPVVTATLANGLQWVPRSRSSDSQSNKDDAPTASSDPETDN N
Sbjct: 145 MDNGATHPVVTATLANGLQWVPRSRSSDSQSNKDDAPTASSDPETDNVAPHPVVSAPVAN 204
Query: 205 GLQWVPRSHSSGSEMDNGEXXXXXXXXXXXXXXXXXXXXXXXKASEKNFETRKRHKLLKS 264
GLQWVPRSHSSGSEMDNGE KASEKNFETRKRHKLLKS
Sbjct: 205 GLQWVPRSHSSGSEMDNGEDYDSYDDDSDDDMVDDTSGDFDSKASEKNFETRKRHKLLKS 264
Query: 265 IFELLEKLSVEQINEKTRQWHCPACKNVRGGVTWYKGLQPLMNHARTKGSKRVKLHRXXX 324
IFELLEKLSVEQINEKTRQWHCPACKNVRGGVTWYKGLQPLMNHARTKGSKRVKLHR
Sbjct: 265 IFELLEKLSVEQINEKTRQWHCPACKNVRGGVTWYKGLQPLMNHARTKGSKRVKLHRELA 324
Query: 325 XXXXXXXYRTGISMASSGEFFGIWKGLRENTDRPIVWPPVVIIMNTRLEQDKDGKWKGMG 384
YRTGISMASSGEFFGIWKGLRENTDRPIVWPPVVIIMNTRLEQDKDGKWKGMG
Sbjct: 325 ALLEEELYRTGISMASSGEFFGIWKGLRENTDRPIVWPPVVIIMNTRLEQDKDGKWKGMG 384
Query: 385 NKELLSYFSKYHVKEACHAYGPDGHSGMSALIFEGSAVAYKEAERLHNHFVDQRTDKYAW 444
NKELLSYFSKYHVKEACHAYGPDGHSGMSALIFEGSAVAYKEAERLHNHFVDQRTDKYAW
Sbjct: 385 NKELLSYFSKYHVKEACHAYGPDGHSGMSALIFEGSAVAYKEAERLHNHFVDQRTDKYAW 444
Query: 445 LNHRIVIPGGKRQLYGFLAEKEDLEAFNRHHGKDYLKYEMKSYNEMVVTQLKQMSEDNQQ 504
LNHRIVIPGGKRQLYGFLAEKEDLEAFNRHHGKDYLKYEMKSYNEMVVTQLKQMSEDNQQ
Sbjct: 445 LNHRIVIPGGKRQLYGFLAEKEDLEAFNRHHGKDYLKYEMKSYNEMVVTQLKQMSEDNQQ 504
Query: 505 LNYVKNEMVKTERHSKEVEEALGVETQKLQGAIEDNIILKRKTKEMLSECVEQMEFNAKF 564
LNYVKNEMVKTERHSKEVEEALGVETQKLQGAIEDNIILKRKTKEMLSECVEQMEFNAKF
Sbjct: 505 LNYVKNEMVKTERHSKEVEEALGVETQKLQGAIEDNIILKRKTKEMLSECVEQMEFNAKF 564
Query: 565 YHEQIERLRKDTEEKENEFERLLQEELARAIECDVDSETTENCKLREEQIQRIIDCQVKD 624
YHEQIERLRKDTEEKENEFERLLQEELARAIECDVDSETTENCKLREEQIQRIIDCQVKD
Sbjct: 565 YHEQIERLRKDTEEKENEFERLLQEELARAIECDVDSETTENCKLREEQIQRIIDCQVKD 624
Query: 625 AEEFDAEQDELIKTHEEKKANVKMEYMAKDVELEEELYAALTSLMEKHKPDIFQPSSP 682
AEEFDAEQDELIKTHEEKKANVKMEYMAKDVELEEELYAALTSLMEKHKPDIFQPSSP
Sbjct: 625 AEEFDAEQDELIKTHEEKKANVKMEYMAKDVELEEELYAALTSLMEKHKPDIFQPSSP 682
>Os12g0197500 Region of unknown function, putative Zinc finger, XS and XH domain
containing protein
Length = 609
Score = 596 bits (1536), Expect = e-170, Method: Compositional matrix adjust.
Identities = 327/622 (52%), Positives = 402/622 (64%), Gaps = 78/622 (12%)
Query: 63 RSGNGSLHPPGNGRVQHSDHRPAARGSPRSLPQNKHTETKLQAPCPVVTAPLANGLQWVP 122
RSG+G+ H GN V+HSD RPA RG+PR PQN+ E +LQAP
Sbjct: 59 RSGSGAFHHSGNTLVRHSDRRPA-RGTPRPPPQNRSIEAELQAP---------------- 101
Query: 123 KSRSSGSESNMDDAPTSGSDPEMDNGATHPVVTATLANGLQWVPRSRSSDSQSNKDDAPT 182
H VVTA LANG QW RS ++S + P
Sbjct: 102 ----------------------------HGVVTAPLANGWQWGARSCPPGTESKEGGLPL 133
Query: 183 ASSDPETDNXXXXXXXXXXXXNGLQWVPRSHSSGSEMDNGEXXXXXXXXXXXXXXXXXXX 242
+ DPETD N E
Sbjct: 134 SGCDPETD------------------------------NAEGYDTSDDDNDDDMSDDLSD 163
Query: 243 XXXXKASEKNFETRKRHKLLKSIFELLEKLSVEQINEKTRQWHCPACKNVRGGVTWYKGL 302
ASEK+FETRK HKL K FE+LE LSVEQ+NE TRQWHCPACKN G + WYKGL
Sbjct: 164 DYDSDASEKSFETRKNHKLFKGFFEVLEALSVEQLNEPTRQWHCPACKNGPGAIDWYKGL 223
Query: 303 QPLMNHARTKGSKRVKLHRXXXXXXXXXXYRTGISMASSGEFFGIWKGLRENTDRPIVWP 362
QPLM HA+TKGS +VK HR R G S+ SGE F WKGLRE+TDR IVWP
Sbjct: 224 QPLMTHAKTKGSIKVKRHRELASLLEEELSRRGTSVVPSGEQFRKWKGLRESTDREIVWP 283
Query: 363 PVVIIMNTRLEQDKDGKWKGMGNKELLSYFSKYHVKEACHAYGPDGHSGMSALIFEGSAV 422
P+V++MNT LEQD+D KWKGMGN+EL+ YFS+Y +A HAYGP+GH GMS LIF+ SAV
Sbjct: 284 PMVVVMNTVLEQDEDDKWKGMGNQELIDYFSEYAASKARHAYGPNGHRGMSVLIFDSSAV 343
Query: 423 AYKEAERLHNHFVDQRTDKYAWLN-HRIV-IPGGKRQLYGFLAEKEDLEAFNRH-HGKDY 479
Y EAERLH+HFV QRTD+ W + H++ +PGGKRQLYGFLA K+D+E FNRH HGK
Sbjct: 344 GYMEAERLHDHFVRQRTDRNTWNSAHKVTFLPGGKRQLYGFLATKDDMETFNRHCHGKSR 403
Query: 480 LKYEMKSYNEMVVTQLKQMSEDNQQLNYVKNEMVKTERHSKEVEEALGVETQKLQGAIED 539
LKYEM+SYNEMVVTQ+KQMSEDNQQLNY+KN+MVK E+HSK VE+ L V TQKL+ +E+
Sbjct: 404 LKYEMRSYNEMVVTQMKQMSEDNQQLNYLKNKMVKKEQHSKLVEDTLSVVTQKLRETMEE 463
Query: 540 NIILKRKTKEMLSECVEQMEFNAKFYHEQIERLRKDTEEKENEFERLLQEELARAIECDV 599
N I++ K KE E ++M++ +F+H+QIE++ K TEEKE +FE+LLQEE A+A + DV
Sbjct: 464 NTIVRNKAKEKHLEYEKEMKYQEEFFHDQIEKIHKATEEKEIKFEKLLQEERAKARQSDV 523
Query: 600 DSETTENCKLREEQIQRIIDCQVKDAEEFDAEQDELIKTHEEKKANVKMEYMAKDVELEE 659
DS +TE+ + R+E+IQ IDCQVKD EEF+AE+D+LIK HEEKK +K EY+AK+ ELE+
Sbjct: 524 DSGSTEDRRQRKEKIQNFIDCQVKDVEEFEAERDKLIKLHEEKKVKLKKEYLAKEFELEK 583
Query: 660 ELYAALTSLMEKHKPDIFQPSS 681
EL ALTSLM+KHKPDIF+ S+
Sbjct: 584 ELDTALTSLMDKHKPDIFKSST 605
>Os03g0159200 Region of unknown function XS domain containing protein
Length = 467
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 65/133 (48%), Gaps = 19/133 (14%)
Query: 359 IVWPPVVIIMNTRLEQDKDGKWKGMGNKELLSYFSK--YHVKEACHAYGPDGHSGMSALI 416
I+WPP VII NT + KDG+ +G+GNKE+ S+ + ++ YG +GH G++ +
Sbjct: 316 IIWPPTVIIHNTATGRKKDGRAEGLGNKEMDKKISELGFAGGKSKSLYGKEGHLGLTLIK 375
Query: 417 FEGSAVAYKEAERLHNHFVDQRTDKYAWLNHRIVIPGG-----------------KRQLY 459
F S KEAERL + Q + WL+ R G +R LY
Sbjct: 376 FANSPAGLKEAERLADFLERQDHGRIGWLHARANQSVGSDNSPLLVETDNRTGEKRRILY 435
Query: 460 GFLAEKEDLEAFN 472
G+LA D++ +
Sbjct: 436 GYLAISSDMDELD 448
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.128 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,799,952
Number of extensions: 953133
Number of successful extensions: 2790
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2777
Number of HSP's successfully gapped: 4
Length of query: 682
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 574
Effective length of database: 11,396,689
Effective search space: 6541699486
Effective search space used: 6541699486
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 159 (65.9 bits)