Os12g0197700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Region of unknown function, putative Zinc finger, XS and XH domain containing protein.
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Os12g0197700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Region of unknown function, putative Zinc finger, XS and XH domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58.55 | 0.36 | 10.3 | 0.0481 | 1.42 | -1.64 | 0.477 | -1.46 | 0.389 | 0.424 | 28.44 | 3209 | -- | -- |
| 60.66 | 0.363 | 10.3 | -0.246 | 1.4 | -1.55 | 0.471 | -- | 0.382 | 0.447 | 45.27 | 3278 | -- | -- |
| 59.51 | 0.359 | 10.3 | 0.0366 | 1.41 | -1.65 | -- | -1.49 | 0.388 | 0.422 | 28.5 | 3263 | -- | -- |
| 61.51 | 0.365 | 10.3 | -0.223 | 1.35 | -1.47 | -- | -- | 0.381 | 0.242 | 41.86 | 2741 | -- | -- |
| 163.21 | 0.595 | 10.3 | 0.146 | -- | -1.88 | -- | -1.53 | 0.442 | -- | 46.54 | 2447 | -- | -- |
| 104.36 | 0.479 | 10.3 | 0.39 | 1.47 | -- | 0.481 | -- | 0.684 | 0.429 | -- | -- | -- | -- |
| 105.35 | 0.481 | 10.3 | 0.372 | 1.47 | -- | -- | -- | 0.682 | 0.405 | -- | -- | -- | -- |
| 164.01 | 0.596 | 10.3 | -0.332 | -- | -1.95 | -- | -- | 0.304 | -- | 65.09 | 2438 | -- | -- |
| 62.54 | 0.368 | 10.3 | -- | 1.34 | -1.38 | -- | -- | 0.419 | 0.263 | 53.22 | 2681 | -- | -- |
| 241.72 | 0.726 | 10.2 | 0.422 | -- | -- | -- | -- | 0.706 | -- | -- | -- | -- | -- |
| 109 | 0.488 | 10.3 | -- | 1.48 | -- | -- | -- | 0.641 | 0.418 | -- | -- | -- | -- |
| 166.43 | 0.601 | 10.3 | -- | -- | -1.82 | -- | -- | 0.364 | -- | 45.92 | 2432 | -- | -- |
| 246.42 | 0.733 | 10.3 | -- | -- | -- | -- | -- | 0.659 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.97 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 2 | 47.16 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 17 | 12 |
| 3 | 47.21 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 18 | 9 |
| 8 | 47.35 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 22 | 47.44 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 10 |
| 24 | 47.45 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 8 |
| 26 | 47.46 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 43 | 47.84 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 18 | 2 |
| 46 | 47.87 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 18 | 5 |
| 93 | 48.11 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 95 | 48.17 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 98 | 48.21 | radiation | 1.0 | 43200 | < th | dose independent | sin | 13 | NA |
| 115 | 48.33 | radiation | 1.0 | 43200 | > th | dose independent | sin | 13 | NA |
| 164 | 48.62 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 12 |
| 202 | 48.89 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 5 | 7 |
| 252 | 49.10 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 9 | 21 |
| 279 | 49.18 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 8 | 22 |
| 283 | 49.23 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 6 |
| 284 | 49.23 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 22 | 8 |
| 288 | 49.24 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 289 | 49.24 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 4 |
| 349 | 49.53 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 358 | 49.59 | radiation | 1.0 | 43200 | < th | dose independent | no | NA | NA |
| 359 | 49.59 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 24 | 19 |
| 370 | 49.59 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 4 | 23 |
| 377 | 49.60 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 4 | 15 |
| 418 | 49.65 | wind | 1.0 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 421 | 49.66 | radiation | 1.0 | 43200 | > th | dose independent | no | NA | NA |
| 422 | 49.66 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 22 | 2 |
| 423 | 49.66 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 4 | 15 |
| 486 | 49.70 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 499 | 49.72 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 516 | 49.75 | radiation | 1.0 | 43200 | < th | dose dependent | sin | 13 | NA |
| 517 | 49.75 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 518 | 49.76 | wind | 1.0 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 523 | 49.77 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 5 | 7 |
| 524 | 49.77 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 568 | 49.85 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 576 | 49.87 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 15 | 5 |
| 593 | 49.87 | humidity | 50.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 595 | 49.88 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 16 | 4 |
| 599 | 49.89 | wind | 1.0 | 43200 | > th | dose independent | rect. | 21 | 3 |
| 611 | 49.95 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 4 | 6 |
| 623 | 49.96 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 24 | 10 |
| 639 | 49.98 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 4 | 6 |
| 717 | 50.06 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 9 | 16 |
| 725 | 50.07 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 9 | 10 |
| 779 | 50.18 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 9 | 10 |
| 877 | 50.30 | atmosphere | 1005.0 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 914 | 50.34 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 9 | 21 |
| 930 | 50.36 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 943 | 50.36 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 976 | 50.43 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 989 | 50.43 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 1 |