Os03g0159200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Region of unknown function XS domain containing protein.
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Os03g0159200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Region of unknown function XS domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.95 | 0.257 | 10.3 | 0.711 | 0.295 | 0.079 | 0.00579 | 1.36 | 0.0299 | 7.67 | 20.1 | 292 | -- | -- |
| 34.63 | 0.274 | 10.3 | 0.667 | 0.256 | -0.282 | -0.219 | -- | 0.0175 | 7.6 | 18.61 | 2080 | -- | -- |
| 29.95 | 0.255 | 10.3 | 0.711 | 0.295 | 0.0788 | -- | 1.36 | 0.0299 | 7.66 | 20.1 | 291 | -- | -- |
| 34.49 | 0.274 | 10.3 | 0.617 | 0.254 | -0.362 | -- | -- | 0.0496 | 7.73 | 18.6 | 1817 | -- | -- |
| 34.02 | 0.272 | 10.3 | 0.799 | -- | -0.032 | -- | 1.16 | 0.0657 | -- | 21.1 | 244 | -- | -- |
| 36.06 | 0.282 | 10.3 | 0.486 | 0.275 | -- | -0.419 | -- | -0.0296 | 7.04 | -- | -- | -- | -- |
| 36.35 | 0.282 | 10.3 | 0.48 | 0.276 | -- | -- | -- | -0.0275 | 7.76 | -- | -- | -- | -- |
| 37.43 | 0.285 | 10.3 | 0.597 | -- | -0.439 | -- | -- | 0.0279 | -- | 18.6 | 613 | -- | -- |
| 42.34 | 0.303 | 10.4 | -- | 0.279 | -0.112 | -- | -- | -0.0631 | 7.4 | 17.78 | 1685 | -- | -- |
| 40.47 | 0.297 | 10.4 | 0.483 | -- | -- | -- | -- | -0.0236 | -- | -- | -- | -- | -- |
| 42.41 | 0.305 | 10.4 | -- | 0.28 | -- | -- | -- | -0.081 | 7.64 | -- | -- | -- | -- |
| 44.88 | 0.312 | 10.4 | -- | -- | 0.227 | -- | -- | -0.139 | -- | 20.8 | 7235 | -- | -- |
| 46.63 | 0.319 | 10.4 | -- | -- | -- | -- | -- | -0.0772 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.59 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 22 |
| 6 | 29.91 | temperature | 20 | 270 | > th | dose independent | rect. | 20 | 23 |
| 8 | 29.93 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 11 | 29.98 | temperature | 25 | 270 | < th | dose dependent | rect. | 10 | 21 |
| 12 | 29.99 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 15 | 30.04 | temperature | 20 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 17 | 30.07 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 18 | 30.08 | temperature | 20 | 270 | < th | dose independent | rect. | 9 | 23 |
| 27 | 30.14 | temperature | 20 | 270 | < th | dose independent | rect. | 23 | 23 |
| 32 | 30.17 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 35 | 30.18 | temperature | 20 | 270 | > th | dose independent | rect. | 7 | 23 |
| 40 | 30.20 | temperature | 20 | 270 | > th | dose independent | rect. | 13 | 23 |
| 41 | 30.20 | temperature | 20 | 270 | < th | dose independent | rect. | 19 | 23 |
| 43 | 30.21 | temperature | 20 | 270 | < th | dose independent | rect. | 17 | 23 |
| 66 | 30.32 | temperature | 20 | 270 | < th | dose independent | rect. | 5 | 23 |
| 86 | 30.38 | temperature | 20 | 270 | < th | dose independent | rect. | 3 | 23 |
| 89 | 30.39 | wind | 5 | 43200 | < th | dose independent | rect. | 23 | 2 |
| 123 | 30.51 | wind | 5 | 43200 | > th | dose independent | rect. | 23 | 2 |
| 144 | 30.58 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 147 | 30.58 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 169 | 30.67 | temperature | 15 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 174 | 30.68 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 3 |
| 180 | 30.69 | wind | 3 | 43200 | > th | dose dependent | rect. | 23 | 2 |
| 186 | 30.71 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 208 | 30.74 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 211 | 30.75 | temperature | 30 | 4320 | < th | dose dependent | rect. | 22 | 1 |
| 258 | 30.81 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 15 |
| 266 | 30.82 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 276 | 30.82 | temperature | 20 | 30 | > th | dose dependent | rect. | 9 | 23 |
| 292 | 30.83 | temperature | 25 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 293 | 30.83 | temperature | 25 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 295 | 30.83 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 296 | 30.83 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 309 | 30.84 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 335 | 30.86 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 336 | 30.86 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 339 | 30.87 | temperature | 20 | 30 | > th | dose independent | rect. | 15 | 23 |
| 346 | 30.87 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 347 | 30.87 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 369 | 30.89 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 9 |
| 419 | 30.93 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 486 | 30.97 | temperature | 15 | 4320 | > th | dose dependent | sin | 14 | NA |
| 487 | 30.97 | temperature | 30 | 720 | < th | dose dependent | sin | 13 | NA |
| 522 | 30.99 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 524 | 30.99 | temperature | 25 | 4320 | < th | dose dependent | sin | 15 | NA |
| 569 | 31.01 | temperature | 20 | 270 | < th | dose independent | sin | 9 | NA |
| 589 | 31.02 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 686 | 31.05 | temperature | 20 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 698 | 31.06 | temperature | 20 | 30 | > th | dose independent | rect. | 20 | 23 |
| 715 | 31.06 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 727 | 31.07 | temperature | 30 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 756 | 31.08 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 9 |
| 824 | 31.10 | temperature | 20 | 30 | > th | dose dependent | rect. | 20 | 23 |
| 871 | 31.12 | temperature | 20 | 4320 | < th | dose independent | rect. | 13 | 17 |
| 934 | 31.14 | temperature | 20 | 270 | > th | dose independent | sin | 6 | NA |
| 945 | 31.14 | temperature | 25 | 270 | < th | dose dependent | sin | 10 | NA |
| 946 | 31.14 | temperature | 25 | 720 | < th | dose dependent | sin | 16 | NA |