BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0197500 Os12g0197500|AK064995
(609 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0197500 Region of unknown function, putative Zinc fing... 1024 0.0
Os12g0197700 Region of unknown function, putative Zinc fing... 549 e-156
Os03g0159200 Region of unknown function XS domain containin... 76 6e-14
>Os12g0197500 Region of unknown function, putative Zinc finger, XS and XH domain
containing protein
Length = 609
Score = 1024 bits (2647), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/586 (85%), Positives = 503/586 (85%)
Query: 24 WETVEKRVKKPAQQVGKGQWGQWNSXXXXXXXXXXRSGSGAFHHSGNTLVRHSDXXXXXX 83
WETVEKRVKKPAQQVGKGQWGQWNS RSGSGAFHHSGNTLVRHSD
Sbjct: 24 WETVEKRVKKPAQQVGKGQWGQWNSPNAAPAPTAPRSGSGAFHHSGNTLVRHSDRRPARG 83
Query: 84 XXXXXXQNRSIEAELQAPHGVVTAPLANGWQWGARSCPPGTESKEGGLPLSGCDPETDNA 143
QNRSIEAELQAPHGVVTAPLANGWQWGARSCPPGTESKEGGLPLSGCDPETDNA
Sbjct: 84 TPRPPPQNRSIEAELQAPHGVVTAPLANGWQWGARSCPPGTESKEGGLPLSGCDPETDNA 143
Query: 144 EGYXXXXXXXXXXXXXXXXXXXXXXXXEKSFETRKNHKLFKGFFEVLEALSVEQLNEPTR 203
EGY EKSFETRKNHKLFKGFFEVLEALSVEQLNEPTR
Sbjct: 144 EGYDTSDDDNDDDMSDDLSDDYDSDASEKSFETRKNHKLFKGFFEVLEALSVEQLNEPTR 203
Query: 204 QWHCPACKNGPGAIDWYKGLQPLMTHAKTKGSIKVKXXXXXXXXXXXXXXXXGTSVVPSG 263
QWHCPACKNGPGAIDWYKGLQPLMTHAKTKGSIKVK GTSVVPSG
Sbjct: 204 QWHCPACKNGPGAIDWYKGLQPLMTHAKTKGSIKVKRHRELASLLEEELSRRGTSVVPSG 263
Query: 264 EQFRKWKGLRESTDREIVWPPMVVVMNTVLEQDEDDKWKGMGNQELIDYFSEYAASKARH 323
EQFRKWKGLRESTDREIVWPPMVVVMNTVLEQDEDDKWKGMGNQELIDYFSEYAASKARH
Sbjct: 264 EQFRKWKGLRESTDREIVWPPMVVVMNTVLEQDEDDKWKGMGNQELIDYFSEYAASKARH 323
Query: 324 AYGPNGHRGMSVLIFDSSAVGYMEAERLHDHFVRQRTDRNTWNSAHKVTFLPGGKRQLYG 383
AYGPNGHRGMSVLIFDSSAVGYMEAERLHDHFVRQRTDRNTWNSAHKVTFLPGGKRQLYG
Sbjct: 324 AYGPNGHRGMSVLIFDSSAVGYMEAERLHDHFVRQRTDRNTWNSAHKVTFLPGGKRQLYG 383
Query: 384 FLATKDDMETFNRHCHGKSRLKYEMRSYNEMVVTQMKQMSEDNQQLNYLKNKMVKKEQHS 443
FLATKDDMETFNRHCHGKSRLKYEMRSYNEMVVTQMKQMSEDNQQLNYLKNKMVKKEQHS
Sbjct: 384 FLATKDDMETFNRHCHGKSRLKYEMRSYNEMVVTQMKQMSEDNQQLNYLKNKMVKKEQHS 443
Query: 444 KLVEDTLSVVTQKLRETMEENTIVRNKAKEKHLEYEKEMKYQEEFFHDQIEKIHKATEEK 503
KLVEDTLSVVTQKLRETMEENTIVRNKAKEKHLEYEKEMKYQEEFFHDQIEKIHKATEEK
Sbjct: 444 KLVEDTLSVVTQKLRETMEENTIVRNKAKEKHLEYEKEMKYQEEFFHDQIEKIHKATEEK 503
Query: 504 EIKFEKLLQEERAKARQSDVDSGSTEDRRQRKEKIQNFIDCQVKDVEEFEAERDXXXXXX 563
EIKFEKLLQEERAKARQSDVDSGSTEDRRQRKEKIQNFIDCQVKDVEEFEAERD
Sbjct: 504 EIKFEKLLQEERAKARQSDVDSGSTEDRRQRKEKIQNFIDCQVKDVEEFEAERDKLIKLH 563
Query: 564 XXXXXXXXXXXXXXXFELEKELDTALTSLMDKHKPDIFKSSTSPST 609
FELEKELDTALTSLMDKHKPDIFKSSTSPST
Sbjct: 564 EEKKVKLKKEYLAKEFELEKELDTALTSLMDKHKPDIFKSSTSPST 609
>Os12g0197700 Region of unknown function, putative Zinc finger, XS and XH domain
containing protein
Length = 682
Score = 549 bits (1415), Expect = e-156, Method: Compositional matrix adjust.
Identities = 309/646 (47%), Positives = 380/646 (58%), Gaps = 81/646 (12%)
Query: 38 VGKGQWGQW---NSXXXXXXXXXXRSGSGAFHHSGNTLVRHSDXXXXXX-XXXXXXQNRS 93
VGKGQ N+ RSG+G+ H GN V+HSD QN+
Sbjct: 39 VGKGQCAPCTSSNAAPKPAMAWQARSGNGSLHPPGNGRVQHSDHRPAARGSPRSLPQNKH 98
Query: 94 IEAELQAPHGVVTAPLANG--W-------------------------------------- 113
E +LQAP VVTAPLANG W
Sbjct: 99 TETKLQAPCPVVTAPLANGLQWVPKSRSSGSESNMDDAPTSGSDPEMDNGATHPVVTATL 158
Query: 114 ----QWGARSCPPGTESKEGGLPLSGCDPETDN--------------------------- 142
QW RS ++S + P + DPETDN
Sbjct: 159 ANGLQWVPRSRSSDSQSNKDDAPTASSDPETDNVAPHPVVSAPVANGLQWVPRSHSSGSE 218
Query: 143 ---AEGYXXXXXXXXXXXXXXXXXXXXXXXXEKSFETRKNHKLFKGFFEVLEALSVEQLN 199
E Y EK+FETRK HKL K FE+LE LSVEQ+N
Sbjct: 219 MDNGEDYDSYDDDSDDDMVDDTSGDFDSKASEKNFETRKRHKLLKSIFELLEKLSVEQIN 278
Query: 200 EPTRQWHCPACKNGPGAIDWYKGLQPLMTHAKTKGSIKVKXXXXXXXXXXXXXXXXGTSV 259
E TRQWHCPACKN G + WYKGLQPLM HA+TKGS +VK G S+
Sbjct: 279 EKTRQWHCPACKNVRGGVTWYKGLQPLMNHARTKGSKRVKLHRELAALLEEELYRTGISM 338
Query: 260 VPSGEQFRKWKGLRESTDREIVWPPMVVVMNTVLEQDEDDKWKGMGNQELIDYFSEYAAS 319
SGE F WKGLRE+TDR IVWPP+V++MNT LEQD+D KWKGMGN+EL+ YFS+Y
Sbjct: 339 ASSGEFFGIWKGLRENTDRPIVWPPVVIIMNTRLEQDKDGKWKGMGNKELLSYFSKYHVK 398
Query: 320 KARHAYGPNGHRGMSVLIFDSSAVGYMEAERLHDHFVRQRTDRNTWNSAHKVTFLPGGKR 379
+A HAYGP+GH GMS LIF+ SAV Y EAERLH+HFV QRTD+ W + H++ +PGGKR
Sbjct: 399 EACHAYGPDGHSGMSALIFEGSAVAYKEAERLHNHFVDQRTDKYAWLN-HRIV-IPGGKR 456
Query: 380 QLYGFLATKDDMETFNRHCHGKSRLKYEMRSYNEMVVTQMKQMSEDNQQLNYLKNKMVKK 439
QLYGFLA K+D+E FNRH HGK LKYEM+SYNEMVVTQ+KQMSEDNQQLNY+KN+MVK
Sbjct: 457 QLYGFLAEKEDLEAFNRH-HGKDYLKYEMKSYNEMVVTQLKQMSEDNQQLNYVKNEMVKT 515
Query: 440 EQHSKLVEDTLSVVTQKLRETMEENTIVRNKAKEKHLEYEKEMKYQEEFFHDQIEKIHKA 499
E+HSK VE+ L V TQKL+ +E+N I++ K KE E ++M++ +F+H+QIE++ K
Sbjct: 516 ERHSKEVEEALGVETQKLQGAIEDNIILKRKTKEMLSECVEQMEFNAKFYHEQIERLRKD 575
Query: 500 TEEKEIKFEKLLQEERAKARQSDVDSGSTEDRRQRKEKIQNFIDCQVKDVEEFEAERDXX 559
TEEKE +FE+LLQEE A+A + DVDS +TE+ + R+E+IQ IDCQVKD EEF+AE+D
Sbjct: 576 TEEKENEFERLLQEELARAIECDVDSETTENCKLREEQIQRIIDCQVKDAEEFDAEQDEL 635
Query: 560 XXXXXXXXXXXXXXXXXXXFELEKELDTALTSLMDKHKPDIFKSST 605
ELE+EL ALTSLM+KHKPDIF+ S+
Sbjct: 636 IKTHEEKKANVKMEYMAKDVELEEELYAALTSLMEKHKPDIFQPSS 681
>Os03g0159200 Region of unknown function XS domain containing protein
Length = 467
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 72/143 (50%), Gaps = 17/143 (11%)
Query: 280 IVWPPMVVVMNTVLEQDEDDKWKGMGNQELIDYFSE--YAASKARHAYGPNGHRGMSVLI 337
I+WPP V++ NT + +D + +G+GN+E+ SE +A K++ YG GH G++++
Sbjct: 316 IIWPPTVIIHNTATGRKKDGRAEGLGNKEMDKKISELGFAGGKSKSLYGKEGHLGLTLIK 375
Query: 338 FDSSAVGYMEAERLHDHFVRQRTDRNTWNSAHKVTFL--------------PGGKRQ-LY 382
F +S G EAERL D RQ R W A + G KR+ LY
Sbjct: 376 FANSPAGLKEAERLADFLERQDHGRIGWLHARANQSVGSDNSPLLVETDNRTGEKRRILY 435
Query: 383 GFLATKDDMETFNRHCHGKSRLK 405
G+LA DM+ + ++ LK
Sbjct: 436 GYLAISSDMDELDSDSRKRASLK 458
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.129 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,665,500
Number of extensions: 669269
Number of successful extensions: 2052
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2041
Number of HSP's successfully gapped: 4
Length of query: 609
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 502
Effective length of database: 11,448,903
Effective search space: 5747349306
Effective search space used: 5747349306
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 159 (65.9 bits)