BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0178700 Os12g0178700|AK072318
(575 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0178700 Similar to Dynamin-like protein 1068 0.0
Os01g0748000 Dynamin family protein 177 2e-44
AK103720 104 2e-22
Os01g0920400 Similar to Dynamin-related protein 3A (Dynamin... 79 9e-15
>Os12g0178700 Similar to Dynamin-like protein
Length = 575
Score = 1068 bits (2761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 524/575 (91%), Positives = 524/575 (91%)
Query: 1 MATPPESLSPXXXXXXXXXXXXRGLLYEAYNELQXXXXXXXXXXXXXXXXXXXXHQTDGK 60
MATPPESLSP RGLLYEAYNELQ HQTDGK
Sbjct: 1 MATPPESLSPAAAAVEDDWEEARGLLYEAYNELQGLAAELGGAAAPAPAVVVVGHQTDGK 60
Query: 61 SALVEALMGFQFNHVGGGTKTRRPVALHLRFNPRCHAPRCRLLAGSGAGDDEDEEAGVAG 120
SALVEALMGFQFNHVGGGTKTRRPVALHLRFNPRCHAPRCRLLAGSGAGDDEDEEAGVAG
Sbjct: 61 SALVEALMGFQFNHVGGGTKTRRPVALHLRFNPRCHAPRCRLLAGSGAGDDEDEEAGVAG 120
Query: 121 RAMPLADIQAYIEAENMRLENDPSQFSEKEIIIRIEYKHCPNLTIIDTPGLILPAPGRKN 180
RAMPLADIQAYIEAENMRLENDPSQFSEKEIIIRIEYKHCPNLTIIDTPGLILPAPGRKN
Sbjct: 121 RAMPLADIQAYIEAENMRLENDPSQFSEKEIIIRIEYKHCPNLTIIDTPGLILPAPGRKN 180
Query: 181 RVLQSQACAVETLVRAKIKHKETIILCLEDCSDWSNATTRRVVMQVDPDLARTVLVSTKL 240
RVLQSQACAVETLVRAKIKHKETIILCLEDCSDWSNATTRRVVMQVDPDLARTVLVSTKL
Sbjct: 181 RVLQSQACAVETLVRAKIKHKETIILCLEDCSDWSNATTRRVVMQVDPDLARTVLVSTKL 240
Query: 241 DTKILQFARASDVEVFLHPPTCALDGSLLGDYPFFTSVPSGRVGSCHEAVFRSNEEFKKA 300
DTKILQFARASDVEVFLHPPTCALDGSLLGDYPFFTSVPSGRVGSCHEAVFRSNEEFKKA
Sbjct: 241 DTKILQFARASDVEVFLHPPTCALDGSLLGDYPFFTSVPSGRVGSCHEAVFRSNEEFKKA 300
Query: 301 ISLRELEDVASLEDKLGRGLTKEEKNRIGVSNXXXXXXXXXXKRYIESVPLIIPLLEKEH 360
ISLRELEDVASLEDKLGRGLTKEEKNRIGVSN KRYIESVPLIIPLLEKEH
Sbjct: 301 ISLRELEDVASLEDKLGRGLTKEEKNRIGVSNLRLFLEELLRKRYIESVPLIIPLLEKEH 360
Query: 361 RGATRKLREVNQEISDLDEAKMKEKARLFHDSFXXXXXXXXXGMVVAPPDRFGETLINER 420
RGATRKLREVNQEISDLDEAKMKEKARLFHDSF GMVVAPPDRFGETLINER
Sbjct: 361 RGATRKLREVNQEISDLDEAKMKEKARLFHDSFLSKLSLLLKGMVVAPPDRFGETLINER 420
Query: 421 INGGTFTGSENFLIPNKLMPNAGMRLYGGAQYHRAMAEFRLVVGSIRCPPITREEIVNAC 480
INGGTFTGSENFLIPNKLMPNAGMRLYGGAQYHRAMAEFRLVVGSIRCPPITREEIVNAC
Sbjct: 421 INGGTFTGSENFLIPNKLMPNAGMRLYGGAQYHRAMAEFRLVVGSIRCPPITREEIVNAC 480
Query: 481 GVEDIHDGTNYSRTACVLAVAKARDTFEPYLHQLGFRLLYIMKRLIPISAFLLEKDGENC 540
GVEDIHDGTNYSRTACVLAVAKARDTFEPYLHQLGFRLLYIMKRLIPISAFLLEKDGENC
Sbjct: 481 GVEDIHDGTNYSRTACVLAVAKARDTFEPYLHQLGFRLLYIMKRLIPISAFLLEKDGENC 540
Query: 541 SSHDVLVKRCQSCQFDRVCMNLLSNHVVKDVWRIW 575
SSHDVLVKRCQSCQFDRVCMNLLSNHVVKDVWRIW
Sbjct: 541 SSHDVLVKRCQSCQFDRVCMNLLSNHVVKDVWRIW 575
>Os01g0748000 Dynamin family protein
Length = 855
Score = 177 bits (450), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 133/460 (28%), Positives = 223/460 (48%), Gaps = 37/460 (8%)
Query: 27 YEAYNELQXXXXXXXXXXXXXXXXXXXXHQTDGKSALVEALMGFQFNHVGGGTKTRRPVA 86
+EAYN LQ Q+DGKS+L+EAL+GF+FN TRRP+
Sbjct: 49 FEAYNRLQAAAVAFGEKLPIPEIVAIGG-QSDGKSSLLEALLGFRFNVREVEMGTRRPLV 107
Query: 87 LHLRFNPRCHAPRCRLLAGSGAGDDEDEEAGVAGRAMPLAD-IQAYIEAENMRLENDPSQ 145
L + +P PRCR +D +E A +AD I+ EA +++ +
Sbjct: 108 LQMVHDPTALDPRCRF-----QEEDSEEYGSPMVLATAIADLIKQRTEAHLRKIQ---AA 159
Query: 146 FSEKEIIIRIEYKHCPNLTIIDTPGLILPAPGRKNRVLQSQACAVETLVRAKIKHKETII 205
S K I++R EY +CPNLTIIDTPG +L A K +S + ++V++ ++
Sbjct: 160 VSPKPIVMRAEYAYCPNLTIIDTPGFVLKA---KKGEPESTPEEILSMVKSLASPPHRLL 216
Query: 206 LCLEDCS-DWSNATTRRVVMQVDPDLARTVLVSTKLDTKILQFARASDVEVFLHPPTCAL 264
L L+ S +W ++ + +DP RT++V +K D ++ +F + +V+ +L
Sbjct: 217 LFLQQSSVEWCSSLWLDAIRDIDPTFRRTMIVISKFDNRLKEFTESWEVDSYLSA----- 271
Query: 265 DGSLLGD--YPFFTSVPSGRVGSCHEAVFRSNEEFKKAISLRELEDVASLEDKLGRGLTK 322
LGD +PFF ++P R G+ SNEEF++ I +++ + L D + G +
Sbjct: 272 -SGYLGDNIHPFFVALPKDR-GTI------SNEEFRRQICQVDIDVLRHLRDNVKGGFNE 323
Query: 323 EEKN-RIGVSNXXXXXXXXXXKRYIESVPLIIPLLEKEHRGATRKLREVNQEI-SDLDEA 380
E+ IG S KRY E+ P + LLE+ + L ++ ++ + D +
Sbjct: 324 EKYGPYIGFSCLKKYLESELQKRYKEAAPATLALLEQRCSEVSMDLSRLDSKLQATSDVS 383
Query: 381 KMKEKARLFHDSFXXXXXXXXXGMVVAPPDRFGETLINERINGG--TFTGSENFLIPNKL 438
+++ A L + G P+ +G+T E+++ G ++ G + P
Sbjct: 384 QLRRSAMLHAANICTHLRSLLDGAADPAPELWGKTTEEEQMHSGIGSWPGINMPVKP--- 440
Query: 439 MPNAGMRLYGGAQYHRAMAEFRLVVGSIRCPPITREEIVN 478
PN+ ++LYGGA + R M EFR S+ CP ++RE++ N
Sbjct: 441 -PNSSLKLYGGAAFERVMHEFRCATYSMECPQVSREKVAN 479
>AK103720
Length = 898
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 142/294 (48%), Gaps = 24/294 (8%)
Query: 192 TLVRAKIKHKETIILCLEDCS-DWSNATTRRVVMQVDPDLARTVLVSTKLDTKILQFARA 250
++V++ ++L L+ S +W ++ + +DP RT++V +K D ++ +F +
Sbjct: 382 SMVKSLASPPHRLLLFLQQSSVEWCSSLWLDAIRDIDPTFRRTMIVISKFDNRLKEFTES 441
Query: 251 SDVEVFLHPPTCALDGSLLGD--YPFFTSVPSGRVGSCHEAVFRSNEEFKKAISLRELED 308
+V+ +L LGD +PFF ++P R G+ SNEEF++ I +++
Sbjct: 442 WEVDSYLSA------SGYLGDNIHPFFVALPKDR-GTI------SNEEFRRQICQVDIDV 488
Query: 309 VASLEDKLGRGLTKEEKN-RIGVSNXXXXXXXXXXKRYIESVPLIIPLLEKEHRGATRKL 367
+ L D + G +E+ IG S KRY E+ P + LLE+ + L
Sbjct: 489 LRHLRDNVKGGFNEEKYGPYIGFSCLKKYLESELQKRYKEAAPATLALLEQRCSEVSMDL 548
Query: 368 REVNQEI-SDLDEAKMKEKARLFHDSFXXXXXXXXXGMVVAPPDRFGETLINERINGG-- 424
++ ++ + D ++++ A L + G P+ +G+T E+++ G
Sbjct: 549 SRLDSKLQATSDVSQLRRSAMLHAANICTHLRSLLDGAADPAPELWGKTTEEEQMHSGIG 608
Query: 425 TFTGSENFLIPNKLMPNAGMRLYGGAQYHRAMAEFRLVVGSIRCPPITREEIVN 478
++ G + P PN+ ++LYGGA + R M EFR S+ CP ++RE++ N
Sbjct: 609 SWPGINMPVKP----PNSSLKLYGGAAFERVMHEFRCATYSMECPQVSREKVAN 658
>Os01g0920400 Similar to Dynamin-related protein 3A (Dynamin-like protein 2)
(Dynamin-like protein 2a). Splice isoform 2
Length = 818
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 100/204 (49%), Gaps = 17/204 (8%)
Query: 56 QTDGKSALVEALMGFQFNHVGGGTKTRRPVALHLRFNPRCHAPRCRLLAGSGAGDDEDEE 115
Q+ GKS+++EAL+G F G TRRP+ L L PR A D+ E
Sbjct: 59 QSSGKSSVLEALVGRDFLPRGSDICTRRPLVLQLVHQPRRPA--------DAEADEWGEF 110
Query: 116 AGVAGRAM-PLADIQAYIEAENMRLENDPSQFSEKEIIIRIEYKHCPNLTIIDTPGLILP 174
+ GR +I+ I+AE R S+K+I ++I + N+T++D PG+
Sbjct: 111 LHLPGRRFYDFREIRREIQAETDREAGGNKGVSDKQIRLKIYSPNVLNITLVDLPGITKV 170
Query: 175 APGRKNRVLQSQACAVETLVRAKIKHKETIILCLEDC-SDWSNATTRRVVMQVDPDLART 233
G + ++++ + T++ + IKHK IIL + +D SN+ ++ DPD +RT
Sbjct: 171 PVGDQPTDIEAR---IRTMILSYIKHKTCIILAVSPANADLSNSDALQIARNADPDGSRT 227
Query: 234 VLVSTKLDTKILQFARASDVEVFL 257
+ V TKLD R +D FL
Sbjct: 228 IGVITKLDI----MDRGTDARNFL 247
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.137 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 19,037,359
Number of extensions: 790908
Number of successful extensions: 1908
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1900
Number of HSP's successfully gapped: 4
Length of query: 575
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 469
Effective length of database: 11,501,117
Effective search space: 5394023873
Effective search space used: 5394023873
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)