Os12g0178700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Dynamin-like protein.
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Os12g0178700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Dynamin-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 214.78 | 0.689 | 8.43 | 1.03 | 3.07 | -4.37 | -0.186 | -2.58 | -0.165 | 16.9 | 30.72 | 114 | 19.2 | -- |
| 219.54 | 0.69 | 8.44 | 0.844 | 2.76 | -4.56 | -0.545 | -- | -0.208 | 15.9 | 32.95 | 184 | 20.7 | -- |
| 214.38 | 0.682 | 8.43 | 1 | 3.05 | -4.38 | -- | -2.41 | -0.162 | 16.7 | 31.3 | 123 | 19.4 | -- |
| 220.27 | 0.691 | 8.44 | 0.833 | 2.81 | -4.46 | -- | -- | -0.201 | 16 | 32.79 | 186 | 20.6 | -- |
| 274.73 | 0.776 | 8.41 | 1.03 | -- | -4.86 | -- | -1.04 | -0.202 | -- | 39.01 | 3 | 22.9 | -- |
| 336.57 | 0.86 | 8.41 | 1.41 | 3.63 | -- | 0.439 | -- | 0.166 | 18.2 | -- | -- | -- | -- |
| 337.05 | 0.86 | 8.41 | 1.41 | 3.63 | -- | -- | -- | 0.168 | 18.2 | -- | -- | -- | -- |
| 253.95 | 0.742 | 8.42 | 0.87 | -- | -5.11 | -- | -- | -0.23 | -- | 36.13 | 192 | 0.632 | -- |
| 236.86 | 0.717 | 8.46 | -- | 2.66 | -4.8 | -- | -- | -0.339 | 15.8 | 32.49 | 205 | 21 | -- |
| 1020.3 | 1.49 | 8.35 | 1.31 | -- | -- | -- | -- | 0.0884 | -- | -- | -- | -- | -- |
| 389.37 | 0.923 | 8.45 | -- | 3.61 | -- | -- | -- | 0.0107 | 18.3 | -- | -- | -- | -- |
| 271.58 | 0.768 | 8.46 | -- | -- | -5.28 | -- | -- | -0.43 | -- | 34.47 | 215 | 0.787 | -- |
| 1065.58 | 1.52 | 8.38 | -- | -- | -- | -- | -- | -0.057 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 202.07 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 11 | 210.55 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 16 | 212.26 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 18 | 213.22 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 30 | 217.31 | temperature | 30 | 90 | < th | dose dependent | sin | 1 | NA |
| 47 | 221.22 | temperature | 10 | 270 | > th | dose dependent | sin | 4 | NA |
| 56 | 222.32 | temperature | 10 | 90 | > th | dose dependent | sin | 1 | NA |
| 66 | 223.40 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 69 | 223.59 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 17 |
| 86 | 225.72 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 173 | 231.52 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 211 | 233.74 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 11 |
| 277 | 237.01 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 14 |
| 302 | 238.12 | temperature | 25 | 270 | > th | dose independent | sin | 3 | NA |
| 347 | 239.68 | temperature | 25 | 270 | < th | dose independent | sin | 3 | NA |
| 349 | 239.69 | temperature | 15 | 720 | > th | dose dependent | rect. | 7 | 4 |
| 362 | 240.07 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 10 |
| 582 | 245.18 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 583 | 245.22 | temperature | 25 | 90 | > th | dose independent | rect. | 8 | 11 |
| 610 | 245.66 | temperature | 25 | 270 | > th | dose independent | rect. | 22 | 21 |
| 632 | 246.03 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 7 |
| 717 | 247.21 | temperature | 20 | 90 | > th | dose dependent | rect. | 22 | 23 |
| 780 | 248.02 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 21 |
| 876 | 249.30 | temperature | 25 | 270 | > th | dose independent | rect. | 24 | 15 |
| 893 | 249.49 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 990 | 250.92 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 4 |