BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0178700 Os12g0178700|AK072318
(575 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G19720.1 | chr3:6850591-6855389 REVERSE LENGTH=778 700 0.0
AT1G53140.1 | chr1:19799271-19802441 FORWARD LENGTH=818 179 5e-45
AT4G33650.2 | chr4:16161073-16166587 FORWARD LENGTH=810 70 5e-12
AT1G14830.1 | chr1:5107699-5111470 REVERSE LENGTH=615 67 2e-11
AT2G14120.3 | chr2:5954253-5960015 REVERSE LENGTH=810 60 3e-09
AT2G44590.3 | chr2:18403856-18406961 REVERSE LENGTH=613 59 8e-09
AT5G42080.1 | chr5:16820661-16824536 REVERSE LENGTH=611 58 1e-08
AT3G60190.1 | chr3:22244367-22247651 REVERSE LENGTH=625 55 7e-08
AT1G60530.1 | chr1:22299797-22301167 FORWARD LENGTH=302 50 2e-06
>AT3G19720.1 | chr3:6850591-6855389 REVERSE LENGTH=778
Length = 777
Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/532 (65%), Positives = 408/532 (76%), Gaps = 11/532 (2%)
Query: 23 RGLLYEAYNELQXXXXXXXXXXXXXXXXXXXXHQTDGKSALVEALMGFQFNHVGGGTKTR 82
R LYEAYNEL QTDGKSALVEALMGFQFNHVGGGTKTR
Sbjct: 25 RWSLYEAYNELHALAQELETPFEAPAVLVVG-QQTDGKSALVEALMGFQFNHVGGGTKTR 83
Query: 83 RPVALHLRFNPRCHAPRCRLLAGSGAGDDEDEEAGVAGRAMPLADIQAYIEAENMRLEND 142
RP+ LH++++P+C P C L G D+D + L+ IQAYIEAENMRLE +
Sbjct: 84 RPITLHMKYDPQCQFPLCHL------GSDDDPSVSLPK---SLSQIQAYIEAENMRLEQE 134
Query: 143 P-SQFSEKEIIIRIEYKHCPNLTIIDTPGLILPAPGRKNRVLQSQACAVETLVRAKIKHK 201
P S FS KEII++++YK+CPNLTIIDTPGLI PAPG KNR LQ QA AVE LVRAK++HK
Sbjct: 135 PCSPFSAKEIIVKVQYKYCPNLTIIDTPGLIAPAPGLKNRALQVQARAVEALVRAKMQHK 194
Query: 202 ETIILCLEDCSDWSNATTRRVVMQVDPDLARTVLVSTKLDTKILQFARASDVEVFLHPPT 261
E IILCLED SDWS ATTRR+VMQVDP+L+RT++VSTKLDTKI QF+ +SDVEVFL PP
Sbjct: 195 EFIILCLEDSSDWSIATTRRIVMQVDPELSRTIVVSTKLDTKIPQFSCSSDVEVFLSPPA 254
Query: 262 CALDGSLLGDYPFFTSVPSGRVGSCHEAVFRSNEEFKKAISLRELEDVASLEDKLGRGLT 321
ALD SLLGD PFFTSVPSGRVG ++V++SN+EFK+A+SLRE+ED+ASLE KLGR LT
Sbjct: 255 SALDSSLLGDSPFFTSVPSGRVGYGQDSVYKSNDEFKQAVSLREMEDIASLEKKLGRLLT 314
Query: 322 KEEKNRIGVSNXXXXXXXXXXKRYIESVPLIIPLLEKEHRGATRKLREVNQEISDLDEAK 381
K+EK+RIG+S KRY ESVPLIIPLL KE+R RKL V++E+S LDEAK
Sbjct: 315 KQEKSRIGISKLRLFLEELLWKRYKESVPLIIPLLGKEYRSTVRKLDTVSKELSSLDEAK 374
Query: 382 MKEKARLFHDSFXXXXXXXXXGMVVAPPDRFGETLINERINGGTFTGSENFLIPNKLMPN 441
+KE+ R FHD F G VVAPPD+FGETL +ER GG F G++ +KL+PN
Sbjct: 375 LKERGRTFHDLFLTKLSLLLKGTVVAPPDKFGETLQDERTQGGAFVGTDGLQFSHKLIPN 434
Query: 442 AGMRLYGGAQYHRAMAEFRLVVGSIRCPPITREEIVNACGVEDIHDGTNYSRTACVLAVA 501
AGMRLYGGAQYHRAMAEFR +VG+I+CPPITREEIVNACGVEDIHDGTNYSRTACV+AVA
Sbjct: 435 AGMRLYGGAQYHRAMAEFRFLVGAIKCPPITREEIVNACGVEDIHDGTNYSRTACVIAVA 494
Query: 502 KARDTFEPYLHQLGFRLLYIMKRLIPISAFLLEKDGENCSSHDVLVKRCQSC 553
KAR+TFEP+LHQLG RLL+I+KRL+PIS +LL+K+GE S H+V +KR S
Sbjct: 495 KARETFEPFLHQLGARLLHILKRLLPISVYLLQKEGEYLSGHEVFLKRVASA 546
>AT1G53140.1 | chr1:19799271-19802441 FORWARD LENGTH=818
Length = 817
Score = 179 bits (453), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 148/511 (28%), Positives = 241/511 (47%), Gaps = 36/511 (7%)
Query: 27 YEAYNELQXXXXXXXXXXXXXXXXXXXXHQTDGKSALVEALMGFQFNHVGGGTKTRRPVA 86
+EAYN LQ Q+DGKS+L+EAL+GF+FN TRRP+
Sbjct: 43 FEAYNRLQAAAVAFGEKLPIPEIVAIGG-QSDGKSSLLEALLGFRFNVREVEMGTRRPLI 101
Query: 87 LHLRFNPRCHAPRCRLLAGSGAGDDEDEEAGVA-GRAMPLAD-IQAYIEAENMRLENDPS 144
L + + PRCR D++ EE G A +AD I++ EA L+ +
Sbjct: 102 LQMVHDLSALEPRCRF------QDEDSEEYGSPIVSATAVADVIRSRTEA---LLKKTKT 152
Query: 145 QFSEKEIIIRIEYKHCPNLTIIDTPGLILPAPGRKNRVLQSQACAVETLVRAKIKHKETI 204
S K I++R EY HCPNLTIIDTPG +L A K ++ + ++V++ I
Sbjct: 153 AVSPKPIVMRAEYAHCPNLTIIDTPGFVLKA---KKGEPETTPDEILSMVKSLASPPHRI 209
Query: 205 ILCLEDCS-DWSNATTRRVVMQVDPDLARTVLVSTKLDTKILQFARASDVEVFLHPPTCA 263
+L L+ S +W ++ V ++D RT++V +K D ++ +F+ +V+ +L
Sbjct: 210 LLFLQQSSVEWCSSLWLDAVREIDSSFRRTIVVVSKFDNRLKEFSDRGEVDRYLSA---- 265
Query: 264 LDGSLLGD--YPFFTSVPSGRVGSCHEAVFRSNEEFKKAISLRELEDVASLEDKLGRGLT 321
LG+ P+F ++P R SN+EF++ IS + E + L + + G
Sbjct: 266 --SGYLGENTRPYFVALPKDRSTI-------SNDEFRRQISQVDTEVIRHLREGVKGGFD 316
Query: 322 KEE-KNRIGVSNXXXXXXXXXXKRYIESVPLIIPLLEKEHRGATRKLREVNQEI-SDLDE 379
+E+ ++ IG + KRY E+ P + LLE+ T + ++ +I + D
Sbjct: 317 EEKFRSCIGFGSLRDFLESELQKRYKEAAPATLALLEERCSEVTDDMLRMDMKIQATSDV 376
Query: 380 AKMKEKARLFHDSFXXXXXXXXXGMVVAPPDRFGETLINERINGGTFTGSENFLIPNKLM 439
A +++ A L+ S G P+++G+T ER G + GS + +
Sbjct: 377 AHLRKAAMLYTASISNHVGALIDGAANPAPEQWGKTTEEER--GESGIGSWPGVSVDIKP 434
Query: 440 PNAGMRLYGGAQYHRAMAEFRLVVGSIRCPPITREEIVNA-CGVEDIHDGTNYSRTACVL 498
PNA ++LYGGA + R + EFR SI CPP++RE++ N G + + +
Sbjct: 435 PNAVLKLYGGAAFERVIHEFRCAAYSIECPPVSREKVANILLAHAGRGGGRGVTEASAEI 494
Query: 499 AVAKARDTFEPYLHQLGFRLLYIMKRLIPIS 529
A AR P L RL +++ L I+
Sbjct: 495 ARTAARSWLAPLLDTACDRLAFVLGSLFEIA 525
>AT4G33650.2 | chr4:16161073-16166587 FORWARD LENGTH=810
Length = 809
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 96/193 (49%), Gaps = 23/193 (11%)
Query: 56 QTDGKSALVEALMGFQFNHVGGGTKTRRPVALHLRFNPRCHAPRCRLLAGSGAGDDEDEE 115
Q+ GKS+++EAL+G F G TRRP+ L L L S A D+E
Sbjct: 68 QSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQL------------LQTKSRANGGSDDE 115
Query: 116 AGVAGRAMP------LADIQAYIEAENMRLENDPSQFSEKEIIIRIEYKHCPNLTIIDTP 169
G R +P ++I+ IEAE RL + ++ +I ++I + N+T++D P
Sbjct: 116 WG-EFRHLPETRFYDFSEIRREIEAETNRLVGENKGVADTQIRLKISSPNVLNITLVDLP 174
Query: 170 GLILPAPGRKNRVLQSQACAVETLVRAKIKHKETIILCLEDC-SDWSNATTRRVVMQVDP 228
G+ G + ++++ + T++ + IK +IL + +D +N+ ++ VDP
Sbjct: 175 GITKVPVGDQPSDIEAR---IRTMILSYIKQDTCLILAVTPANTDLANSDALQIASIVDP 231
Query: 229 DLARTVLVSTKLD 241
D RT+ V TKLD
Sbjct: 232 DGHRTIGVITKLD 244
>AT1G14830.1 | chr1:5107699-5111470 REVERSE LENGTH=615
Length = 614
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 88/196 (44%), Gaps = 34/196 (17%)
Query: 56 QTDGKSALVEALMGFQFNHVGGGTKTRRPVALHL--------RFNPRCHAPRCRLLAGSG 107
Q+ GKS+++E+++G F G G TRRP+ L L + HAP+ R
Sbjct: 44 QSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGTTEYAEFLHAPKKRF----- 98
Query: 108 AGDDEDEEAGVAGRAMPLADIQAYIEAENMRLENDPSQFSEKEIIIRIEYKHCPNLTIID 167
A ++ IE E R+ Q S I + I + NLT+ID
Sbjct: 99 ---------------ADFAAVRKEIEDETDRITGKSKQISNIPIQLSIYSPNVVNLTLID 143
Query: 168 TPGLI-LPAPGRKNRVLQSQACAVETLVRAKIKHKETIILCLEDCS-DWSNATTRRVVMQ 225
PGL + G+ ++Q +E +VR+ ++ IIL + + D + + ++ +
Sbjct: 144 LPGLTKVAVDGQPESIVQD----IENMVRSYVEKPNCIILAISPANQDIATSDAIKLARE 199
Query: 226 VDPDLARTVLVSTKLD 241
VDP RT V+TKLD
Sbjct: 200 VDPTGERTFGVATKLD 215
>AT2G14120.3 | chr2:5954253-5960015 REVERSE LENGTH=810
Length = 809
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 91/191 (47%), Gaps = 18/191 (9%)
Query: 56 QTDGKSALVEALMGFQFNHVGGGTKTRRPVALHLRFNPRCHAPRCRLLAGSGAGDDEDEE 115
Q+ GKS+++EAL+G F G TRRP+ L L + S G DE+
Sbjct: 52 QSSGKSSVLEALVGRDFLPRGNDICTRRPLRLQL----------VQTKPSSDGGSDEEWG 101
Query: 116 AGV----AGRAMPLADIQAYIEAENMRLENDPSQFSEKEIIIRIEYKHCPNLTIIDTPGL 171
+ R ++I+ IEAE R+ + S+ I ++I + +++++D PG+
Sbjct: 102 EFLHHDPVRRIYDFSEIRREIEAETNRVSGENKGVSDIPIGLKIFSPNVLDISLVDLPGI 161
Query: 172 ILPAPGRKNRVLQSQACAVETLVRAKIKHKETIILCLEDC-SDWSNATTRRVVMQVDPDL 230
G + ++++ + T++ IK +IL + +D +N+ ++ DPD
Sbjct: 162 TKVPVGDQPSDIEAR---IRTMILTYIKEPSCLILAVSPANTDLANSDALQIAGNADPDG 218
Query: 231 ARTVLVSTKLD 241
RT+ V TKLD
Sbjct: 219 HRTIGVITKLD 229
>AT2G44590.3 | chr2:18403856-18406961 REVERSE LENGTH=613
Length = 612
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 88/188 (46%), Gaps = 18/188 (9%)
Query: 56 QTDGKSALVEALMGFQFNHVGGGTKTRRPVALHLRFNPRCHAPRCRLLAGSGAGDDEDEE 115
Q+ GKS+++E+++G F G G TRRP+ L L +G D+ +
Sbjct: 44 QSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTE------------NGTEDNAEFL 91
Query: 116 AGVAGRAMPLADIQAYIEAENMRLENDPSQFSEKEIIIRIEYKHCPNLTIIDTPGLI-LP 174
+ + ++ IE E R+ Q S I + I + NLT+ID PGL +
Sbjct: 92 HLTNKKFTNFSLVRKEIEDETDRITGKNKQISSIPIHLSIFSPNVVNLTLIDLPGLTKVA 151
Query: 175 APGRKNRVLQSQACAVETLVRAKIKHKETIILCLEDCS-DWSNATTRRVVMQVDPDLART 233
G+ +++ +E++VR+ ++ +IL + + D + + ++ +VDP RT
Sbjct: 152 VEGQPETIVED----IESMVRSYVEKPNCLILAISPANQDIATSDAMKLAKEVDPIGDRT 207
Query: 234 VLVSTKLD 241
V TKLD
Sbjct: 208 FGVLTKLD 215
>AT5G42080.1 | chr5:16820661-16824536 REVERSE LENGTH=611
Length = 610
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 86/196 (43%), Gaps = 34/196 (17%)
Query: 56 QTDGKSALVEALMGFQFNHVGGGTKTRRPVALHLR--------FNPRCHAPRCRLLAGSG 107
Q+ GKS+++E+++G F G G TRRP+ L L+ + H PR +
Sbjct: 43 QSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKF----- 97
Query: 108 AGDDEDEEAGVAGRAMPLADIQAYIEAENMRLENDPSQFSEKEIIIRIEYKHCPNLTIID 167
A ++ I+ E R S I + I + NLT+ID
Sbjct: 98 ---------------TDFAAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLID 142
Query: 168 TPGLI-LPAPGRKNRVLQSQACAVETLVRAKIKHKETIILCLEDCS-DWSNATTRRVVMQ 225
PGL + G+ + +++ +E +VR+ I+ IIL + + D + + ++ +
Sbjct: 143 LPGLTKVAVDGQSDSIVKD----IENMVRSYIEKPNCIILAISPANQDLATSDAIKISRE 198
Query: 226 VDPDLARTVLVSTKLD 241
VDP RT V TK+D
Sbjct: 199 VDPSGDRTFGVLTKID 214
>AT3G60190.1 | chr3:22244367-22247651 REVERSE LENGTH=625
Length = 624
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 83/193 (43%), Gaps = 28/193 (14%)
Query: 56 QTDGKSALVEALMGFQFNHVGGGTKTRRPVALHLRFNPRCHAPRCRLLAGSGAGDDEDEE 115
Q+ GKS+++E+++G F G G TRRP+ L L DD EE
Sbjct: 49 QSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLH-----------------KTDDGTEE 91
Query: 116 AGV-----AGRAMPLADIQAYIEAENMRLENDPSQFSEKEIIIRIEYKHCPNLTIIDTPG 170
+ A ++ I+ E R+ Q S I + I + NLT+ID PG
Sbjct: 92 YAEFLHLPKKQFTDFALVRREIQDETDRITGKNKQISPVPIHLSIYSPNVVNLTLIDLPG 151
Query: 171 LI-LPAPGRKNRVLQSQACAVETLVRAKIKHKETIILCLEDCS-DWSNATTRRVVMQVDP 228
L + G+ + + +E++VR + IIL + + D + + ++ VDP
Sbjct: 152 LTKVAVEGQPETIAED----IESMVRTYVDKPNCIILAISPANQDIATSDAIKLAKDVDP 207
Query: 229 DLARTVLVSTKLD 241
RT V TKLD
Sbjct: 208 TGERTFGVLTKLD 220
>AT1G60530.1 | chr1:22299797-22301167 FORWARD LENGTH=302
Length = 301
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 94/208 (45%), Gaps = 25/208 (12%)
Query: 56 QTDGKSALVEALMGFQFNHVGGGTKTRRPVALHLRFNPRCHAPRCRL-LAGSGAGDDEDE 114
Q+ GKS+++E+L G G G TR P+ + L+ R +P + L S DE
Sbjct: 71 QSSGKSSVLESLAGINLPR-GQGICTRVPLVMRLQ---RSSSPEPEIWLEYSDKVVPTDE 126
Query: 115 EAGVAGRAMPLADIQAYIEAENMRLENDPSQFSEKEIIIRIEYKHCPNLTIIDTPGLI-L 173
E VA D+ A S+ + + ++ + P+LT++D PG+ +
Sbjct: 127 EH-VAEAICAATDVIA----------GTGEGVSDTPLTLSVKKNNVPDLTMVDLPGITRV 175
Query: 174 PAPGRKNRVLQSQACAVETLVRAKIKHKETIIL-CLEDCSDWSNATTRRVVMQVDPDLAR 232
P G+ + + + ++ I+ +E+IIL L D++ + R+ QVD R
Sbjct: 176 PVNGQPENIYEQ----ISRMIMKYIEPQESIILNVLSATVDFTTCESIRMSRQVDKTGER 231
Query: 233 TVLVSTKLDTK---ILQFARASDVEVFL 257
T+ V TK D +LQ A DV + L
Sbjct: 232 TLAVVTKADMAPEGLLQKVTADDVSIGL 259
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.137 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,915,898
Number of extensions: 487713
Number of successful extensions: 1050
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 1034
Number of HSP's successfully gapped: 9
Length of query: 575
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 471
Effective length of database: 8,255,305
Effective search space: 3888248655
Effective search space used: 3888248655
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)