BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0164600 Os12g0164600|J065163H24
(414 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0164600 Protein of unknown function DUF793 family protein 498 e-141
Os11g0163800 Protein of unknown function DUF793 family protein 345 3e-95
Os04g0688000 Protein of unknown function DUF793 family protein 67 2e-11
>Os12g0164600 Protein of unknown function DUF793 family protein
Length = 414
Score = 498 bits (1282), Expect = e-141, Method: Compositional matrix adjust.
Identities = 275/414 (66%), Positives = 275/414 (66%)
Query: 1 MPVTEHQXXXXXXXXXXXXXXLLSLRRDHVAMPSGEEADLEAFQRHFAASXXXXXXXXXX 60
MPVTEHQ LLSLRRDHVAMPSGEEADLEAFQRHFAAS
Sbjct: 1 MPVTEHQGSSSSPSTFSFGRSLLSLRRDHVAMPSGEEADLEAFQRHFAASLGELLPGEVE 60
Query: 61 XXXXXXXXXXXXXXXXILSVAWIRRLLEAFILCQEEFRVFVAQARRRGALPAAGEKLVVE 120
ILSVAWIRRLLEAFILCQEEFRVFVAQARRRGALPAAGEKLVVE
Sbjct: 61 GGGGGGGGGGGGGGEEILSVAWIRRLLEAFILCQEEFRVFVAQARRRGALPAAGEKLVVE 120
Query: 121 FHERAVKALDVCNAARDGVDQVRRWERLADIAASVLLAPGEIHEGQLRRARKAXXXXXXX 180
FHERAVKALDVCNAARDGVDQVRRWERLADIAASVLLAPGEIHEGQLRRARKA
Sbjct: 121 FHERAVKALDVCNAARDGVDQVRRWERLADIAASVLLAPGEIHEGQLRRARKALSDLSVL 180
Query: 181 XXXXTAASGSGGVASFLASHRNXXXXXXXXXXXXXXXXXXTSSSHFXXXXXXXXXXXXXX 240
TAASGSGGVASFLASHRN TSSSHF
Sbjct: 181 LVDDTAASGSGGVASFLASHRNRSFGRARASPSRASFAGATSSSHFRSLSWSVSRAWSAS 240
Query: 241 XQLQAIGAGLAAPRAHEAGLAAPVYAMGCXXXXXXXXXXXXXPCPDRSTXXXXXXXXXXX 300
QLQAIGAGLAAPRAHEAGLAAPVYAMGC PCPDRST
Sbjct: 241 RQLQAIGAGLAAPRAHEAGLAAPVYAMGCVLHLVAWALVAAVPCPDRSTALQAHHLPAAP 300
Query: 301 XXXXXXXXXXXXTLQERLAEEGKRKDRRNSCGLLKEIHVLEKSTQKLTDAIDAAPIPLFG 360
TLQERLAEEGKRKDRRNSCGLLKEIHVLEKSTQKLTDAIDAAPIPLFG
Sbjct: 301 ARAAFPWAPPLLTLQERLAEEGKRKDRRNSCGLLKEIHVLEKSTQKLTDAIDAAPIPLFG 360
Query: 361 XXXXXXXXXXXXXXXXXXXMRDGLEPLERQVREVFHRIVRSRVEGLDSSMRNAD 414
MRDGLEPLERQVREVFHRIVRSRVEGLDSSMRNAD
Sbjct: 361 DREADVREAAAELAAVCAAMRDGLEPLERQVREVFHRIVRSRVEGLDSSMRNAD 414
>Os11g0163800 Protein of unknown function DUF793 family protein
Length = 419
Score = 345 bits (885), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 224/410 (54%), Positives = 241/410 (58%), Gaps = 33/410 (8%)
Query: 22 LLSLRRDHVAMPS--------GEEADLEAFQRHFAASXXXXXXXXXXXXXXXXXXXXXXX 73
LLSLRRD A + GEEADLEAFQRH AA
Sbjct: 26 LLSLRRDSPAAAAGASPAMASGEEADLEAFQRHVAAHLADLRGGEDE------------- 72
Query: 74 XXXILSVAWIRRLLEAFILCQEEFRVFVAQARRRGALPAAGEKLVVEFHERAVKALDVCN 133
+LS+ WIRRLLEAF+LCQEEFRV VA ARRRGAL AA EK+V +F+ERAVKALDVCN
Sbjct: 73 ---LLSIEWIRRLLEAFLLCQEEFRVVVALARRRGALSAAAEKMVGDFYERAVKALDVCN 129
Query: 134 AARDGVDQVRRWERLADIAASVLLAPGEIHEGQLRRARKAXX-XXXXXXXXXTAASGSGG 192
AARDGVDQVRRWERLA IAASVLLAPGEIHEGQLRRARKA AA+G GG
Sbjct: 130 AARDGVDQVRRWERLAGIAASVLLAPGEIHEGQLRRARKALSDLSVLLIDDAAAAAGGGG 189
Query: 193 VASFLASHRNXXXXXXXXX--------XXXXXXXXXTSSSHFXXXXXXXXXXXXXXXQLQ 244
VASFL+SHRN +SSSHF QLQ
Sbjct: 190 VASFLSSHRNRSFGRARASPSRSATLASSSSSSSSSSSSSHFRSLSWSVSRNWSAARQLQ 249
Query: 245 AIGAGLAAPRAHEAGLAAPVYAMGCXXXXXXXXXXXXXPCPDRSTXXXXXXXXXXXXXXX 304
AIG+GLAAPRAHE GL APVY+MGC PCPDR+
Sbjct: 250 AIGSGLAAPRAHEGGLVAPVYSMGCLLHLAAWALVAAVPCPDRAAALQAHHLPAAPPRAA 309
Query: 305 XXXXXXXXTLQERLAEEGKRKDRRNSCGLLKEIHVLEKSTQKLTDAIDAAPIPLFGXXXX 364
LQERL EEGKRKDRRNSCGLLKEIH LEK TQ+L +AIDAAP+PL G
Sbjct: 310 FPWAPPLLALQERLTEEGKRKDRRNSCGLLKEIHALEKCTQRLAEAIDAAPVPLSGEREA 369
Query: 365 XXXXXXXXXXXXXXXMRDGLEPLERQVREVFHRIVRSRVEGLDSSMRNAD 414
MR GLEPLERQVREVFHRIVRSR+EGLDS M NAD
Sbjct: 370 EVREAAAELAAVCAAMRAGLEPLERQVREVFHRIVRSRMEGLDSPMLNAD 419
>Os04g0688000 Protein of unknown function DUF793 family protein
Length = 456
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 82/168 (48%), Gaps = 26/168 (15%)
Query: 22 LLSLRRDHVAM-------------PSGEEADLEAFQRHFAASXXXXXXXXXXXXXXXXXX 68
LS RRD + PS + +++AF RH A
Sbjct: 20 FLSHRRDQIPPPPPDHHSHSHTQHPSSSDLEIDAFHRHAA----------DLLHDLLSDS 69
Query: 69 XXXXXXXXILSVAWIRRLLEAFILCQEEFR-VFVAQARRRGALPAAGEKLVVEFHERAVK 127
+LS+AW RRLL++F++C EEFR + A A + ++L+++F +RAVK
Sbjct: 70 NSDPSAPDLLSLAWTRRLLDSFLICLEEFRAILFALADSQPLSRPPLDRLLLDFLDRAVK 129
Query: 128 ALDVCNAARDGVDQVRRWER--LADIAASVLLAPGEIHEGQLRRARKA 173
ALD+CNA RDG+D +R+W + AA + E Q+RRARKA
Sbjct: 130 ALDLCNALRDGLDLIRQWRKHLAIAAAALATAPAAQRGEAQIRRARKA 177
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.133 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,687,427
Number of extensions: 243284
Number of successful extensions: 491
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 480
Number of HSP's successfully gapped: 3
Length of query: 414
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 311
Effective length of database: 11,657,759
Effective search space: 3625563049
Effective search space used: 3625563049
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)