Os04g0688000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF793 family protein.
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Os04g0688000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF793 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.46 | 0.32 | 10.5 | 1.92 | 0.75 | -0.676 | -0.222 | 3.11 | 0.547 | 15.4 | 20.6 | 1552 | -- | -- |
| 51.11 | 0.333 | 10.5 | 1.57 | 0.718 | -0.983 | -0.321 | -- | 0.555 | 15.3 | 11.57 | 19563 | -- | -- |
| 46.5 | 0.318 | 10.5 | 1.93 | 0.742 | -0.68 | -- | 3.15 | 0.549 | 15.4 | 21.1 | 1532 | -- | -- |
| 51.22 | 0.333 | 10.5 | 1.49 | 0.735 | -0.922 | -- | -- | 0.542 | 15.4 | 12.05 | 17369 | -- | -- |
| 73.04 | 0.398 | 10.4 | 1.94 | -- | -0.866 | -- | 3.34 | 0.569 | -- | 20.12 | 1194 | -- | -- |
| 62.83 | 0.372 | 10.6 | 0.79 | 0.75 | -- | -0.248 | -- | 0.166 | 15.3 | -- | -- | -- | -- |
| 63.03 | 0.372 | 10.6 | 0.785 | 0.749 | -- | -- | -- | 0.165 | 15.3 | -- | -- | -- | -- |
| 79.09 | 0.414 | 10.5 | 1.36 | -- | -0.976 | -- | -- | 0.461 | -- | 9.129 | 11155 | -- | -- |
| 75.35 | 0.406 | 10.6 | -- | 0.923 | -0.496 | -- | -- | 0.111 | 15.2 | 24.94 | 100 | -- | -- |
| 94.74 | 0.455 | 10.6 | 0.753 | -- | -- | -- | -- | 0.145 | -- | -- | -- | -- | -- |
| 79.26 | 0.416 | 10.6 | -- | 0.734 | -- | -- | -- | 0.0771 | 15.3 | -- | -- | -- | -- |
| 104.91 | 0.477 | 10.6 | -- | -- | -0.338 | -- | -- | 0.101 | -- | 21.25 | 1154 | -- | -- |
| 109.7 | 0.489 | 10.6 | -- | -- | -- | -- | -- | 0.0613 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.77 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 13 |
| 4 | 43.16 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 24 | 44.09 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 29 | 44.20 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 40 | 44.22 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 4 |
| 44 | 44.31 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 3 |
| 136 | 45.68 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 143 | 45.70 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 144 | 45.71 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 145 | 45.71 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 163 | 45.88 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 164 | 45.89 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 10 |
| 171 | 45.93 | humidity | 90 | 14400 | > th | dose dependent | rect. | 19 | 8 |
| 173 | 45.94 | wind | 1 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 176 | 45.94 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 15 |
| 181 | 45.96 | radiation | 1 | 14400 | < th | dose dependent | rect. | 19 | 10 |
| 188 | 46.00 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 192 | 46.01 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 6 |
| 196 | 46.02 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 198 | 46.03 | temperature | 20 | 1440 | > th | dose dependent | sin | 14 | NA |
| 221 | 46.11 | temperature | 25 | 4320 | > th | dose independent | rect. | 10 | 3 |
| 253 | 46.20 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 266 | 46.24 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 318 | 46.39 | temperature | 25 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 326 | 46.40 | humidity | 90 | 14400 | > th | dose dependent | sin | 13 | NA |
| 359 | 46.49 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 19 |
| 368 | 46.53 | temperature | 25 | 720 | < th | dose dependent | sin | 5 | NA |
| 452 | 46.67 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 11 |
| 471 | 46.70 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 3 |
| 521 | 46.78 | humidity | 80 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 531 | 46.79 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 539 | 46.80 | temperature | 25 | 4320 | < th | dose independent | rect. | 9 | 9 |
| 545 | 46.80 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 564 | 46.83 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 567 | 46.83 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 7 |
| 594 | 46.85 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 23 |
| 597 | 46.86 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 6 |
| 606 | 46.86 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 619 | 46.89 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 651 | 46.92 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 665 | 46.94 | temperature | 25 | 4320 | > th | dose independent | sin | 0 | NA |
| 666 | 46.94 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 6 |
| 682 | 46.95 | radiation | 1 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 699 | 46.96 | temperature | 25 | 720 | < th | dose dependent | rect. | 20 | 14 |
| 791 | 47.05 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 812 | 47.07 | temperature | 25 | 4320 | < th | dose independent | sin | 23 | NA |
| 892 | 47.14 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 990 | 47.22 | humidity | 80 | 43200 | < th | dose independent | rect. | 4 | 4 |