BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0688000 Os04g0688000|Os04g0688000
(456 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G18740.1 | chr1:6464125-6465273 FORWARD LENGTH=383 90 3e-18
AT1G43630.1 | chr1:16436445-16437686 REVERSE LENGTH=414 89 7e-18
AT1G74450.1 | chr1:27982737-27983930 FORWARD LENGTH=398 79 4e-15
AT1G63930.1 | chr1:23727927-23729174 FORWARD LENGTH=416 58 9e-09
AT4G23530.1 | chr4:12279171-12280361 FORWARD LENGTH=397 52 7e-07
>AT1G18740.1 | chr1:6464125-6465273 FORWARD LENGTH=383
Length = 382
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 67/123 (54%), Gaps = 6/123 (4%)
Query: 83 WTRRLLDSFLICLEEFRAILFALADSQXXXXXXXXXXXXXXXXXAVKALDLCNALRDGLD 142
W +LLDSFL C EEFRAI+F ++KALD+CNA+RDG++
Sbjct: 70 WIGKLLDSFLCCQEEFRAIVFN--HRSQISKSPMDRLISDYFERSIKALDVCNAIRDGIE 127
Query: 143 LIRQWRKHLXXXXXXXXXXXXXQRGEAQIRRARKALTDLTILMLDDKD--AGGVVGQRNR 200
IRQW K GE Q+RRA+KAL DL I MLD+KD +G + RNR
Sbjct: 128 QIRQWEK--LADIVISALDSHRPIGEGQLRRAKKALIDLAIGMLDEKDHPSGTNLAHRNR 185
Query: 201 SFG 203
SFG
Sbjct: 186 SFG 188
>AT1G43630.1 | chr1:16436445-16437686 REVERSE LENGTH=414
Length = 413
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 65/120 (54%), Gaps = 5/120 (4%)
Query: 83 WTRRLLDSFLICLEEFRAILFALADSQXXXXXXXXXXXXXXXXXAVKALDLCNALRDGLD 142
W +LLDSFL C E+FR I+F +VKALD+CNA+RDG++
Sbjct: 96 WIGKLLDSFLCCQEDFRVIIFN--HKPQLLKQPMDRLIEEYFERSVKALDVCNAIRDGIE 153
Query: 143 LIRQWRKHLXXXXXXXXXXXXXQRGEAQIRRARKALTDLTILMLDDKDAGGVVGQRNRSF 202
IRQW+K L Q GE +I RA+KAL DL I MLD+KD+ RNRSF
Sbjct: 154 QIRQWQK-LIEIVISALDTNQRQLGEGEIHRAKKALIDLAIGMLDEKDSSNT--HRNRSF 210
>AT1G74450.1 | chr1:27982737-27983930 FORWARD LENGTH=398
Length = 397
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 67/129 (51%), Gaps = 10/129 (7%)
Query: 83 WTRRLLDSFLICLEEFRAILFALADSQXXXXXXXXXXXXXXXXXAVKALDLCNALRDGLD 142
W +LLDSFL C EEFR+I+ + +VKALD+CNA+RDG++
Sbjct: 69 WVGKLLDSFLSCQEEFRSIV--INHRSMITKPPMDRLVSDYFERSVKALDVCNAIRDGVE 126
Query: 143 LIRQWRKHLXXXXXXXXXX---XXXQR--GEAQIRRARKALTDLTILMLDDKDAGGVVG- 196
IRQW+K + +R GE Q RRARK L +L I MLD+KD+
Sbjct: 127 QIRQWQKLIEIVICAFNNNGGGSSGKRPLGEGQFRRARKTLIELAIGMLDEKDSSSSSVS 186
Query: 197 --QRNRSFG 203
RNRSFG
Sbjct: 187 SQHRNRSFG 195
>AT1G63930.1 | chr1:23727927-23729174 FORWARD LENGTH=416
Length = 415
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 8/111 (7%)
Query: 83 WTRRLLDSFLICLEEFRAILFALADSQXXXXXXXXXXXXXXXXXAVKALDLCNALRDGLD 142
W R+L+D FL C EF+AIL D ++KALD+C A+ +G+D
Sbjct: 77 WLRKLMDVFLCCEAEFKAILLMGRDPTQISKPPFDRLVPEMLDRSIKALDICTAVVNGID 136
Query: 143 LIRQWRKHLXXXXXXXXXXXXXQR--GEAQIRRARKALTDLTI-LMLDDKD 190
+R +++ QR G+ +RRA++AL +L + L L+DK+
Sbjct: 137 SVRHYQR-----LAEIAVTALEQRPLGDGNVRRAKRALANLVVALSLEDKE 182
>AT4G23530.1 | chr4:12279171-12280361 FORWARD LENGTH=397
Length = 396
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 58/117 (49%), Gaps = 14/117 (11%)
Query: 83 WTRRLLDSFLICLEEFRAILFALADSQXXXXXXXXXXXXXXXXXAVKALDLCNALRDGLD 142
W + LLD F+ C EF+A+L + +Q +KALDLCNA+ +G+D
Sbjct: 77 WLQNLLDVFMSCEAEFKAVL---STTQISKSPSLERVLPEMLDRILKALDLCNAVVNGID 133
Query: 143 LIRQWRKHLXXXXXXXXXXXXXQRG--EAQIRRARKALTDLTI-LMLD---DKDAGG 193
+RQ R+ QR + +RRA++ALT L I L D D+++GG
Sbjct: 134 SVRQSRRF-----AEIAVTALKQRPLCDGSVRRAKRALTSLLIGLNADERRDRNSGG 185
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.133 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,400,414
Number of extensions: 122161
Number of successful extensions: 337
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 329
Number of HSP's successfully gapped: 5
Length of query: 456
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 354
Effective length of database: 8,310,137
Effective search space: 2941788498
Effective search space used: 2941788498
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)