BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0688000 Os04g0688000|Os04g0688000
         (456 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0688000  Protein of unknown function DUF793 family protein   451   e-127
Os12g0164600  Protein of unknown function DUF793 family protein    86   5e-17
Os11g0163800  Protein of unknown function DUF793 family protein    84   2e-16

>Os04g0688000 Protein of unknown function DUF793 family protein
          Length = 456

 Score =  451 bits (1160), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 262/456 (57%), Positives = 262/456 (57%)

Query: 1   MPATDSSSAAAPLTSFGRSFLXXXXXXXXXXXXXXXXXXXXXXXXXXDLEIDAFHRXXXX 60
           MPATDSSSAAAPLTSFGRSFL                          DLEIDAFHR    
Sbjct: 1   MPATDSSSAAAPLTSFGRSFLSHRRDQIPPPPPDHHSHSHTQHPSSSDLEIDAFHRHAAD 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXWTRRLLDSFLICLEEFRAILFALADSQXXXXXXXXXXX 120
                                 WTRRLLDSFLICLEEFRAILFALADSQ           
Sbjct: 61  LLHDLLSDSNSDPSAPDLLSLAWTRRLLDSFLICLEEFRAILFALADSQPLSRPPLDRLL 120

Query: 121 XXXXXXAVKALDLCNALRDGLDLIRQWRKHLXXXXXXXXXXXXXQRGEAQIRRARKALTD 180
                 AVKALDLCNALRDGLDLIRQWRKHL             QRGEAQIRRARKALTD
Sbjct: 121 LDFLDRAVKALDLCNALRDGLDLIRQWRKHLAIAAAALATAPAAQRGEAQIRRARKALTD 180

Query: 181 LTILMLDDKDAGGVVGQRNRSFGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISGHSP 240
           LTILMLDDKDAGGVVGQRNRSFGS                              ISGHSP
Sbjct: 181 LTILMLDDKDAGGVVGQRNRSFGSASTTRTPFPTATATTAGAAAAGAPGPALAPISGHSP 240

Query: 241 GASPAHGPPRASSRPSGEASRCXXXXXXXXXXXXXXXXXXXXXXXXXXXGRSWXXXXXXX 300
           GASPAHGPPRASSRPSGEASRC                           GRSW       
Sbjct: 241 GASPAHGPPRASSRPSGEASRCPARTTSPPPEASPPPSTPWAPCCSSSPGRSWQQSHART 300

Query: 301 XXXXXXXXXCPGPSPGLXXXXXXXXXXXXXXXXXXXXXXXXCSRRSTRLSAARGSSWRSL 360
                    CPGPSPGL                        CSRRSTRLSAARGSSWRSL
Sbjct: 301 AASRRTSQRCPGPSPGLAPSSHSSTASSTSPRRRTASTHAACSRRSTRLSAARGSSWRSL 360

Query: 361 MLRSSXXXXXXXXXXXXXXXSWCKFAGHSRMGWTLLSARCGRCSTGLCAPGQKSSTTSVG 420
           MLRSS               SWCKFAGHSRMGWTLLSARCGRCSTGLCAPGQKSSTTSVG
Sbjct: 361 MLRSSPWPTTRIPRCRRPRRSWCKFAGHSRMGWTLLSARCGRCSTGLCAPGQKSSTTSVG 420

Query: 421 RTTPGEDSLLDPTLCEMQPLHRACESLLEQFFVLMV 456
           RTTPGEDSLLDPTLCEMQPLHRACESLLEQFFVLMV
Sbjct: 421 RTTPGEDSLLDPTLCEMQPLHRACESLLEQFFVLMV 456



>Os12g0164600 Protein of unknown function DUF793 family protein
          Length = 414

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 50/128 (39%), Positives = 69/128 (53%), Gaps = 10/128 (7%)

Query: 83  WTRRLLDSFLICLEEFRAILFALADSQXXXXXXXXXXXXXXXXXAVKALDLCNALRDGLD 142
           W RRLL++F++C EEFR +  A A  +                 AVKALD+CNA RDG+D
Sbjct: 82  WIRRLLEAFILCQEEFR-VFVAQARRRGALPAAGEKLVVEFHERAVKALDVCNAARDGVD 140

Query: 143 LIRQWRKHLXXXXXXXXXXXXXQRGEAQIRRARKALTDLTILMLDDKDAGG-------VV 195
            +R+W +               +  E Q+RRARKAL+DL++L++DD  A G       + 
Sbjct: 141 QVRRWER--LADIAASVLLAPGEIHEGQLRRARKALSDLSVLLVDDTAASGSGGVASFLA 198

Query: 196 GQRNRSFG 203
             RNRSFG
Sbjct: 199 SHRNRSFG 206



>Os11g0163800 Protein of unknown function DUF793 family protein
          Length = 419

 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/129 (39%), Positives = 70/129 (54%), Gaps = 11/129 (8%)

Query: 83  WTRRLLDSFLICLEEFRAILFALADSQXXXXXXXXXXXXXXXXXAVKALDLCNALRDGLD 142
           W RRLL++FL+C EEFR ++ ALA  +                 AVKALD+CNA RDG+D
Sbjct: 78  WIRRLLEAFLLCQEEFR-VVVALARRRGALSAAAEKMVGDFYERAVKALDVCNAARDGVD 136

Query: 143 LIRQWRKHLXXXXXXXXXXXXXQRGEAQIRRARKALTDLTILMLDDKDAGG--------V 194
            +R+W +               +  E Q+RRARKAL+DL++L++DD  A          +
Sbjct: 137 QVRRWER--LAGIAASVLLAPGEIHEGQLRRARKALSDLSVLLIDDAAAAAGGGGVASFL 194

Query: 195 VGQRNRSFG 203
              RNRSFG
Sbjct: 195 SSHRNRSFG 203



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.133    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,462,184
Number of extensions: 233819
Number of successful extensions: 794
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 784
Number of HSP's successfully gapped: 3
Length of query: 456
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 352
Effective length of database: 11,605,545
Effective search space: 4085151840
Effective search space used: 4085151840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)