BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0161700 Os12g0161700|AK106794
         (247 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0161700  Hypothetical protein                                513   e-146
Os12g0161500  Hypothetical protein                                145   4e-35
Os11g0160100  Zinc finger, FYVE/PHD-type domain containing p...    99   3e-21

>Os12g0161700 Hypothetical protein
          Length = 247

 Score =  513 bits (1321), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 247/247 (100%), Positives = 247/247 (100%)

Query: 1   MLSRSLRALVNVTKHSRLEVWPASLGTSSFTDENIALFLFPPKMRPDGKLDQLVKEVIEY 60
           MLSRSLRALVNVTKHSRLEVWPASLGTSSFTDENIALFLFPPKMRPDGKLDQLVKEVIEY
Sbjct: 1   MLSRSLRALVNVTKHSRLEVWPASLGTSSFTDENIALFLFPPKMRPDGKLDQLVKEVIEY 60

Query: 61  DLALRAVMGKTEMLIFPSTMLPKQYQAFQGKHYLWGLFRPRKDIVGVAEEQAAHAMCLEN 120
           DLALRAVMGKTEMLIFPSTMLPKQYQAFQGKHYLWGLFRPRKDIVGVAEEQAAHAMCLEN
Sbjct: 61  DLALRAVMGKTEMLIFPSTMLPKQYQAFQGKHYLWGLFRPRKDIVGVAEEQAAHAMCLEN 120

Query: 121 QEGSKDGTEQVEFHGVPDPNMDTEPQDPEAAEMQDAADRNMAPPIGGSNASRANHPSMAA 180
           QEGSKDGTEQVEFHGVPDPNMDTEPQDPEAAEMQDAADRNMAPPIGGSNASRANHPSMAA
Sbjct: 121 QEGSKDGTEQVEFHGVPDPNMDTEPQDPEAAEMQDAADRNMAPPIGGSNASRANHPSMAA 180

Query: 181 TQPANREQIDPSLGIPQGRMFAFVAQPTPRFEQLMQELEREGALISTMPRVTYGPGCGQS 240
           TQPANREQIDPSLGIPQGRMFAFVAQPTPRFEQLMQELEREGALISTMPRVTYGPGCGQS
Sbjct: 181 TQPANREQIDPSLGIPQGRMFAFVAQPTPRFEQLMQELEREGALISTMPRVTYGPGCGQS 240

Query: 241 QATTAKG 247
           QATTAKG
Sbjct: 241 QATTAKG 247



>Os12g0161500 Hypothetical protein
          Length = 530

 Score =  145 bits (365), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 91/230 (39%), Positives = 130/230 (56%), Gaps = 8/230 (3%)

Query: 2   LSRSLRALVNVTKHSRLEVWPASLGTSSFTDENIALFLFPPKMRPDGKLDQLVKEVIEYD 61
           LS S+ ++V VTK SR  VWP SL  SS TD++I L+ FPPKMR D  +DQLVKE++E D
Sbjct: 283 LSVSIPSIVQVTKLSRSVVWPKSLEASSPTDDSIGLYFFPPKMRLDKGMDQLVKEIVEKD 342

Query: 62  LALRAVMGKTEMLIFPSTMLPKQYQAFQGKHYLWGLFRPRKDIVGVAEEQAAHAMCLENQ 121
           +AL AV+G+ +ML+FPST+LP++Y+ FQGKHYLWG+F+ R      A   AA      +Q
Sbjct: 343 MALSAVIGEAQMLMFPSTLLPEKYRTFQGKHYLWGVFKRRGGDEQQAAAMAAEQQRGSDQ 402

Query: 122 EGSKDGTEQVEFHGVPDPNMDTEPQDPEAAEMQDAADRNMAPPIGGSNASRANHPSMAAT 181
              K   E  +F G        +P     + +Q+ A     P    S++  A H  +   
Sbjct: 403 R-VKQEQENTQFQGDETQQRIKKPN----SNLQETAVIKQQPSSPSSSSVTAAHIGVDVV 457

Query: 182 QPANREQIDPSLGIP---QGRMFAFVAQPTPRFEQLMQELEREGALISTM 228
           Q  +         +P    GR+   V + TP  E+L+Q++ R GAL++TM
Sbjct: 458 QEKSTAASGGRPAVPAGSHGRVIGLVVRQTPGVEELIQQMRRGGALLATM 507



>Os11g0160100 Zinc finger, FYVE/PHD-type domain containing protein
          Length = 688

 Score = 98.6 bits (244), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/144 (38%), Positives = 79/144 (54%), Gaps = 4/144 (2%)

Query: 2   LSRSLRALVNVTKHSRLEVWPASLGTSSF-TDENIALFLFPPKMRPDGKLDQLVKEVIEY 60
           LS SL  ++ VT+  +L+ WP S   +S  + E+I LF F    R + + D LVK VI+Y
Sbjct: 478 LSMSLPQIMKVTELPKLKAWPKSWEKASVPSAESIGLFFFSQNTRSNKEFDDLVKHVIDY 537

Query: 61  DLALRAVMGKTEMLIFPSTMLPKQYQAFQGKHYLWGLFRPRKDIVGVAEEQAAHAMCLEN 120
           D+ L   +   ++L+FPS +LP +Y+ FQGKHYLWG+F+  KD+   AE  A        
Sbjct: 538 DIVLETDVSFAKLLVFPSVVLPAEYRVFQGKHYLWGVFKRSKDM---AERDALVEQNCTT 594

Query: 121 QEGSKDGTEQVEFHGVPDPNMDTE 144
               +D  EQ     VP   +D E
Sbjct: 595 CLADEDVPEQNALDIVPCKALDQE 618



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.132    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,940,223
Number of extensions: 378532
Number of successful extensions: 1167
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1167
Number of HSP's successfully gapped: 3
Length of query: 247
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 149
Effective length of database: 11,918,829
Effective search space: 1775905521
Effective search space used: 1775905521
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)